Publications by authors named "Simone Rizzetto"

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High expression of interleukin-18 receptor alpha correlates with severe respiratory viral disease and defines T cells with reduced cytotoxic signatures.
Aira F Cabug, Jeremy Chase Crawford, Hayley A McQuilten, Isabelle J H Foo, Lilith F Allen, Simone Rizzetto

Nat Commun· November 2025

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Central memory T cells with key TCR repertoires and gene expression profiles dominate influenza CD8+ T cell pools across the human lifespan.
Tejas Menon, Hayley A McQuilten, Jerome Samir, Thi H O Nguyen, Ratana Lim, Simone Rizzetto

Proc Natl Acad Sci U S A· July 2025

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Glioportal: a comprehensive transcriptomic resource unveiling ligand-mediated mesenchymal transition in glioblastoma.
Qing You Pang, Wisna Novera, Lynnette Wei Hsien Koh, Yuk Kien Chong, See Wee Lim, Simone Rizzetto

Neuro Oncol· June 2025

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Transcriptome Deconvolution Reveals Absence of Cancer Cell Expression Signature in Immune Checkpoint Blockade Response.
Yu Amanda Guo, Tanmay Kulshrestha, Mei Mei Chang, Irfahan Kassam, Egor Revkov, Simone Rizzetto

Cancer Res Commun· June 2024

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Newborn and child-like molecular signatures in older adults stem from TCR shifts across human lifespan.
Carolien E van de Sandt, Thi H O Nguyen, Nicholas A Gherardin, Jeremy Chase Crawford, Jerome Samir, Simone Rizzetto

Nat Immunol· November 2023

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Identification of human progenitors of exhausted CD8 T cells associated with elevated IFN-γ response in early phase of viral infection.
Curtis Cai, Jerome Samir, Mehdi R Pirozyan, Thiruni N Adikari, Money Gupta, Simone Rizzetto

Nat Commun· December 2022

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CD8 T cell landscape in Indigenous and non-Indigenous people restricted by influenza mortality-associated HLA-A*24:02 allomorph.
Luca Hensen, Patricia T Illing, E Bridie Clemens, Thi H O Nguyen, Marios Koutsakos, Simone Rizzetto

Nat Commun· May 2021

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Pan-Cancer Analysis of Ligand-Receptor Cross-talk in the Tumor Microenvironment.
Umesh Ghoshdastider, Neha Rohatgi, Marjan Mojtabavi Naeini, Probhonjon Baruah, Egor Revkov, Simone Rizzetto

Cancer Res· April 2021

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Cytotoxic T cells swarm by homotypic chemokine signalling.
Jorge Luis Galeano Niño, Sophie V Pageon, Szun S Tay, Feyza Colakoglu, Daryan Kempe, Simone Rizzetto

Elife· October 2020

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Mass cytometry reveals immune signatures associated with cytomegalovirus (CMV) control in recipients of allogeneic haemopoietic stem cell transplant and CMV-specific T cells.
Helen M McGuire, Simone Rizzetto, Barbara P Withers, Leighton E Clancy, Selmir Avdic

Clin Transl Immunology· July 2020

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Single-Cell Transcriptome Analysis of T Cells.
Willem Van Der Byl, Simone Rizzetto, Jerome Samir, Curtis Cai, Auda A Eltahla

Methods Mol Biol· June 2020

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B cell immunodominance in primary hepatitis C virus infection.
Nicholas A Brasher, Auda A Eltahla, Alexander Underwood, Irene Boo, Simone Rizzetto

J Hepatol· April 2020

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Lymphoma Driver Mutations in the Pathogenic Evolution of an Iconic Human Autoantibody.
Mandeep Singh, Katherine J L Jackson, Jing J Wang, Peter Schofield, Matt A Field, Simone Rizzetto

Cell· March 2020

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Exploring and analysing single cell multi-omics data with VDJView.
Jerome Samir, Simone Rizzetto, Money Gupta, Fabio Luciani

BMC Med Genomics· February 2020

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Mass Cytometry for the Assessment of Immune Reconstitution After Hematopoietic Stem Cell Transplantation.
Lauren Stern, Helen McGuire, Selmir Avdic, Simone Rizzetto, Barbara Fazekas de St Groth

Front Immunol· September 2019

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Human CD8 T cell cross-reactivity across influenza A, B and C viruses.
Marios Koutsakos, Patricia T Illing, Thi H O Nguyen, Nicole A Mifsud, Jeremy Chase Crawford, Simone Rizzetto

Nat Immunol· May 2019

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Toward Large-Scale Computational Prediction of Protein Complexes.
Simone Rizzetto, Attila Csikász-Nagy

Methods Mol Biol· March 2019

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Context-dependent prediction of protein complexes by SiComPre.
Simone Rizzetto, Petros Moyseos, Bianca Baldacci, Corrado Priami, Attila Csikász-Nagy

NPJ Syst Biol Appl· September 2018

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B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle.
Simone Rizzetto, David N P Koppstein, Jerome Samir, Mandeep Singh, Joanne H Reed

Bioinformatics· August 2018

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Clonally diverse CD38HLA-DRCD8 T cells persist during fatal H7N9 disease.
Zhongfang Wang, Lingyan Zhu, Thi H O Nguyen, Yanmin Wan, Sneha Sant, Simone Rizzetto

Nat Commun· February 2018

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Impact of sequencing depth and read length on single cell RNA sequencing data of T cells.
Simone Rizzetto, Auda A Eltahla, Peijie Lin, Rowena Bull, Andrew R Lloyd

Sci Rep· October 2017

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A Liver Capsular Network of Monocyte-Derived Macrophages Restricts Hepatic Dissemination of Intraperitoneal Bacteria by Neutrophil Recruitment.
Frederic Sierro, Maximilien Evrard, Simone Rizzetto, Michelle Melino, Andrew J Mitchell

Immunity· August 2017

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Linking the T cell receptor to the single cell transcriptome in antigen-specific human T cells.
Auda A Eltahla, Simone Rizzetto, Mehdi R Pirozyan, Brigid D Betz-Stablein, Vanessa Venturi

Immunol Cell Biol· July 2016

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Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations.
Simone Rizzetto, Corrado Priami, Attila Csikász-Nagy

PLoS Comput Biol· October 2015

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