Publications by authors named "Jesse Salk"

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Application of error-corrected sequencing technologies for in vivo regulatory mutagenicity assessment.
Carole L Yauk, Anthony M Lynch, Vasily N Dobrovolsky, Maik Schuler, Stephanie L Smith-Roe, Jesse J Salk

Regul Toxicol Pharmacol· January 2026

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MutSeqR: an open source R package for standardized analysis of error-corrected next-generation sequencing data in genetic toxicology.
Annette E Dodge, Andrew Williams, Danielle P M LeBlanc, David M Schuster, Elena Esina, Jesse J Salk

Bioinform Adv· November 2025

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Alignment between Duplex Sequencing and transgenic rodent mutation assay data in the assessment of in vivo NDMA-induced mutagenesis.
Anne L Ashford, Daniela Nachmanson, John W Wills, Jacob E Higgins, Thomas H Smith, Jesse J Salk

Arch Toxicol· October 2025

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Transferability, Reproducibility and Sensitivity of Mutation Quantification by Duplex Sequencing.
Shaofei Zhang, Barbara L Parsons, Devon Fitzgerald, Anne Ashford, James Todd Auman, Jesse Salk

Environ Mol Mutagen· August 2025

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Duplex sequencing identifies unique characteristics of ENU-induced mutations in male mouse germ cells†.
Danielle P M LeBlanc, Gu Zhou, Andrew Williams, Matthew J Meier, Charles C Valentine, Jesse J Salk

Biol Reprod· May 2025

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Author Correction: Mitochondrial somatic mutation and selection throughout ageing.
Isabel M Serrano, Misa Hirose, Charles C Valentine, Sharon Roesner, Elizabeth Schmidt, Jesse Salk

Nat Ecol Evol· April 2025

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Adverse Outcome Pathway-Informed Integrated Testing to Identify Chemicals Causing Genotoxicity Through Oxidative DNA Damage: Case Study on 4-Nitroquinoline 1-Oxide.
Elizabeth Huliganga, Eunnara Cho, Carol D Swartz, Andrew Williams, Leslie Recio, Jesse J Salk

Environ Mol Mutagen· April 2025

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Dose-Related Mutagenic and Clastogenic Effects of Benzo[]fluoranthene in Mouse Somatic Tissues Detected by Duplex Sequencing and the Micronucleus Assay.
David M Schuster, Danielle P M LeBlanc, Gu Zhou, Matthew J Meier, Annette E Dodge, Jesse J Salk

Environ Sci Technol· December 2024

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Author Correction: Frequency and spectrum of mutations in human sperm measured using duplex sequencing correlate with trio-based de novo mutation analyses.
Jonatan Axelsson, Danielle LeBlanc, Habiballah Shojaeisaadi, Matthew J Meier, Devon M Fitzgerald, Jesse Salk

Sci Rep· December 2024

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Frequency and spectrum of mutations in human sperm measured using duplex sequencing correlate with trio-based de novo mutation analyses.
Jonatan Axelsson, Danielle LeBlanc, Habiballah Shojaeisaadi, Matthew J Meier, Devon M Fitzgerald, Jesse Salk

Sci Rep· October 2024

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Characterization of clonal dynamics using duplex sequencing in donor-recipient pairs decades after hematopoietic cell transplantation.
Masumi Ueda Oshima, Jacob Higgins, Isaac Jenkins, Timothy Randolph, Thomas Smith, Jesse Salk

Sci Transl Med· October 2024

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Measurable Residual FLT3 Internal Tandem Duplication Before Allogeneic Transplant for Acute Myeloid Leukemia.
Laura W Dillon, Gege Gui, Niveditha Ravindra, Georgia Andrew, Devdeep Mukherjee, Jesse J Salk

JAMA Oncol· August 2024

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Improving the Assessment of Risk Factors Relevant to Potential Carcinogenicity of Gene Therapies: A Consensus Article.
Jan C Klapwijk, Alberto Del Rio Espinola, Silvana Libertini, Philippe Collin, Mick D Fellows, Jesse J Salk

Hum Gene Ther· August 2024

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Mitochondrial haplotype and mito-nuclear matching drive somatic mutation and selection throughout ageing.
Isabel M Serrano, Misa Hirose, Charles C Valentine, Sharon Roesner, Elizabeth Schmidt, Jesse Salk

Nat Ecol Evol· May 2024

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Quantification of measurable residual disease using duplex sequencing in adults with acute myeloid leukemia.
Laura W Dillon, Jake Higgins, Hassan Nasif, Megan Othus, Lan Beppu, Jesse J Salk

Haematologica· February 2024

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Error-corrected next generation sequencing - Promises and challenges for genotoxicity and cancer risk assessment.
Francesco Marchetti, Renato Cardoso, Connie L Chen, George R Douglas, Joanne Elloway, Jesse J Salk

Mutat Res Rev Mutat Res· December 2023

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Mitochondrial haplotype and mito-nuclear matching drive somatic mutation and selection throughout aging.
Isabel M Serrano, Misa Hirose, Charles C Valentine, Sharon Roesner, Elizabeth Schmidt, Jesse Salk

bioRxiv· October 2023

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Adopting duplex sequencing technology for genetic toxicity testing: A proof-of-concept mutagenesis experiment with N-ethyl-N-nitrosourea (ENU)-exposed rats.
Stephanie L Smith-Roe, Cheryl A Hobbs, Victoria Hull, J Todd Auman, Leslie Recio, Jesse J Salk

Mutat Res Genet Toxicol Environ Mutagen· October 2023

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Next Generation Sequencing Workshop at the Royal Society of Medicine (London, May 2022): how genomics is on the path to modernizing genetic toxicology.
Anthony M Lynch, Thalita B Zanoni, Jesse J Salk, Inigo Martincorena, Robert R Young

Mutagenesis· August 2023

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Duplex sequencing provides detailed characterization of mutation frequencies and spectra in the bone marrow of MutaMouse males exposed to procarbazine hydrochloride.
Annette E Dodge, Danielle P M LeBlanc, Gu Zhou, Andrew Williams, Matthew J Meier, Jesse J Salk

Arch Toxicol· August 2023

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Error-corrected duplex sequencing enables direct detection and quantification of mutations in human TK6 cells with strong inter-laboratory consistency.
Eunnara Cho, Carol D Swartz, Andrew Williams, Miriam V Rivas, Leslie Recio, Jesse J Salk

Mutat Res Genet Toxicol Environ Mutagen· July 2023

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svCapture: efficient and specific detection of very low frequency structural variant junctions by error-minimized capture sequencing.
Thomas E Wilson, Samreen Ahmed, Jake Higgins, Jesse J Salk, Thomas W Glover

NAR Genom Bioinform· June 2023

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Adopting Duplex Sequencing™ Technology for Genetic Toxicity Testing: A Proof-of-Concept Mutagenesis Experiment with N-Ethyl-N-Nitrosourea (ENU)-Exposed Rats.
Stephanie L Smith-Roe, Cheryl A Hobbs, Victoria Hull, J Todd Auman, Leslie Recio, Jesse J Salk

bioRxiv· May 2023

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Error-corrected next-generation sequencing to advance nonclinical genotoxicity and carcinogenicity testing.
Francesco Marchetti, Renato Cardoso, Connie L Chen, George R Douglas, Joanne Elloway, Jesse J Salk

Nat Rev Drug Discov· March 2023

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Quantification of measurable residual disease using duplex sequencing in adults with acute myeloid leukemia.
Laura W Dillon, Jake Higgins, Hassan Nasif, Megan Othus, Lan Beppu, Jesse J Salk

medRxiv· March 2023

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