Publications by authors named "John Atkins"

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Comprehensive analysis of yeast +1 ribosomal frameshifting unveils a novel stimulator supporting two distinct frameshifting mechanisms.
Darren A Fenton, Maria Bożko, Michał I Świrski, Gary Loughran, Martina M Yordanova, John F Atkins

Nucleic Acids Res· November 2025

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Translon: a single term for translated regions.
Michał I Świrski, Jack A S Tierney, M Mar Albà, Dmitry E Andreev, Julie L Aspden, John F Atkins

Nat Methods· October 2025

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Programmed ribosomal frameshifting during mRNA decoding generates a constitutively active proteoform that supports myocardial function.
Gary Loughran, Raffaella De Pace, Ningyu Ding, Jianchao Zhang, Irwin Jungreis, John F Atkins

Sci Adv· October 2025

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The dual luciferase assay does not support claims of stop codon readthrough on the AGO1 mRNA.
Apoorva N Suresh, John F Atkins, Gary Loughran

EMBO J· July 2025

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Guidelines for minimal reporting requirements, design and interpretation of experiments involving the use of eukaryotic dual gene expression reporters (MINDR).
Gary Loughran, Dmitry E Andreev, Ilya M Terenin, Olivier Namy, Martin Mikl, John F Atkins

Nat Struct Mol Biol· March 2025

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Programmed ribosomal frameshifting during mRNA decoding generates a constitutively active proteoform that supports myocardial function.
Gary Loughran, Raffaella De Pace, Ningyu Ding, Jianchao Zhang, Irwin Jungreis, John F Atkins

bioRxiv· January 2025

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Characterization of Human Shoulder Joint Stiffness Across 3D Arm Postures and Its Sex Differences.
Seunghoon Hwang, Dongjune Chang, Aditya Saxena, Ellory Oleen, Soe Lin Paing, John Atkins

IEEE Trans Biomed Eng· October 2024

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The weapons of mass destruction-civil support team PA.
Joshua K Radi, Robert A Dent, Cesar A Allen, Jeffrey A Anderson, John B Atkins

JAAPA· February 2024

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Design of a wearable shoulder exoskeleton robot with dual-purpose gravity compensation and a compliant misalignment compensation mechanism.
John Atkins, Dongjune Chang, Hyunglae Lee

Wearable Technol· February 2024

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Our current understanding of the toxicity of altered mito-ribosomal fidelity during mitochondrial protein synthesis: What can it tell us about human disease?
Antón Vila-Sanjurjo, Natalia Mallo, John F Atkins, Joanna L Elson, Paul M Smith

Front Physiol· June 2023

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Nontriplet feature of genetic code in ciliates is a result of neutral evolution.
Sofya A Gaydukova, Mikhail A Moldovan, Adriana Vallesi, Stephen M Heaphy, John F Atkins

Proc Natl Acad Sci U S A· May 2023

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Protocol for designing, optimizing, and analyzing reverse supply chains using RELOG.
Chukwunwike O Iloeje, Alinson Santos Xavier, John Atkins, Kyle Sun, Audrey Gallier

STAR Protoc· March 2023

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The translating bacterial ribosome at 1.55 Å resolution generated by cryo-EM imaging services.
Simon A Fromm, Kate M O'Connor, Michael Purdy, Pramod R Bhatt, Gary Loughran, John F Atkins

Nat Commun· February 2023

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Monitoring translation in all reading frames downstream of weak stop codons provides mechanistic insights into the impact of nucleotide and cellular contexts.
Gary Loughran, Xiang Li, Sinead O'Loughlin, John F Atkins, Pavel V Baranov

Nucleic Acids Res· January 2023

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No stopping with a short-stem transfer RNA.
Pavel V Baranov, John F Atkins

Nature· January 2023

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rare codon UUA: from features associated with 2 related locations to candidate phage regulatory translational bypassing.
Ivan V Antonov, Sinéad O'Loughlin, Alessandro N Gorohovski, Patrick B F O'Connor, Pavel V Baranov, John F Atkins

RNA Biol· January 2023

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Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding.
Gary Loughran, Alla D Fedorova, Yousuf A Khan, John F Atkins, Pavel V Baranov

Mol Cell· October 2022

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A systematic analysis of the costs and environmental impacts of critical materials recovery from hybrid electric vehicle batteries in the U.S.
Chukwunwike O Iloeje, Alinson Santos Xavier, Diane Graziano, John Atkins, Kyle Sun

iScience· September 2022

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Maximum depth sequencing reveals an ON/OFF replication slippage switch and apparent in vivo selection for bifidobacterial pilus expression.
Christophe Penno, Mary O'Connell Motherway, Yuan Fu, Virag Sharma, Fiona Crispie, John F Atkins

Sci Rep· June 2022

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Evaluating ribosomal frameshifting in CCR5 mRNA decoding.
Yousuf A Khan, Gary Loughran, Anna-Lena Steckelberg, Katherine Brown, Stephen J Kiniry, John F Atkins

Nature· April 2022

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Immune cells alter genetic decoding in cancer.
Pavel V Baranov, John F Atkins

Nature· March 2022

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Stop codon readthrough contexts influence reporter expression differentially depending on the presence of an IRES.
Martina M Yordanova, Gary Loughran, John F Atkins, Pavel V Baranov

Wellcome Open Res· January 2022

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Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome.
Pramod R Bhatt, Alain Scaiola, Gary Loughran, Marc Leibundgut, Annika Kratzel, John F Atkins

Science· June 2021

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From Recoding to Peptides for MHC Class I Immune Display: Enriching Viral Expression, Virus Vulnerability and Virus Evasion.
John F Atkins, Kate M O'Connor, Pramod R Bhatt, Gary Loughran

Viruses· June 2021

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Tissue-specific dynamic codon redefinition in .
Andrew M Hudson, Nicholas L Szabo, Gary Loughran, Norma M Wills, John F Atkins

Proc Natl Acad Sci U S A· February 2021

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