Publications by authors named "John Coller"

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Multi-scaled transcriptomics of chronically inflamed nasal epithelium reveals immune-epithelial dynamics and tissue remodeling in nasal polyp formation.
Guanrui Liao, Tsuguhisa Nakayama, Bokai Zhu, Ivan T Lee, Jason Yeung, John Coller

Immunity· October 2025

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Author Correction: Community assessment of methods to deconvolve cellular composition from bulk gene expression.
Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, John Coller

Nat Commun· November 2024

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A developmental biliary lineage program cooperates with Wnt activation to promote cell proliferation in hepatoblastoma.
Peng V Wu, Matt Fish, Florette K Hazard, Chunfang Zhu, Sujay Vennam, John Coller

Nat Commun· November 2024

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Community assessment of methods to deconvolve cellular composition from bulk gene expression.
Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, John Coller

Nat Commun· August 2024

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Combined near infrared photoacoustic imaging and ultrasound detects vulnerable atherosclerotic plaque.
Martin Karl Schneider, James Wang, Aris Kare, Shaunak S Adkar, Darren Salmi, John Coller

Biomaterials· November 2023

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Combined near infrared photoacoustic imaging and ultrasound detects vulnerable atherosclerotic plaque.
Martin Karl Schneider, James Wang, Aris Kare, Shaunak S Adkar, Darren Salmi, John Coller

medRxiv· June 2023

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Multiplexed evaluation of mouse wound tissue using oligonucleotide barcoding with single-cell RNA sequencing.
Michael Januszyk, Michelle Griffin, Shamik Mascharak, Heather E Talbott, Kellen Chen, John Coller

STAR Protoc· March 2023

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Flow-Cell-Based Technology for Massively Parallel Characterization of Base-Modified DNA Aptamers.
Diana Wu, Trevor Feagin, Peter Mage, Alexandra Rangel, Leighton Wan, John Coller

Anal Chem· February 2023

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Multiomic analysis reveals conservation of cancer-associated fibroblast phenotypes across species and tissue of origin.
Deshka S Foster, Michael Januszyk, Daniel Delitto, Kathryn E Yost, Michelle Griffin, John Coller

Cancer Cell· November 2022

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Post-infusion CAR T cells identify patients resistant to CD19-CAR therapy.
Zinaida Good, Jay Y Spiegel, Bita Sahaf, Meena B Malipatlolla, Zach J Ehlinger, John Coller

Nat Med· September 2022

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Integrated spatial multiomics reveals fibroblast fate during tissue repair.
Deshka S Foster, Michael Januszyk, Kathryn E Yost, Malini S Chinta, Gunsagar S Gulati, John Coller

Proc Natl Acad Sci U S A· October 2021

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Genetic associations with a fever after measles-containing vaccines.
Nicola P Klein, Ousseny Zerbo, Kristin Goddard, Weiqi Wang, Alison E Fohner, John Coller

Hum Vaccin Immunother· June 2021

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Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans.
Prabhu S Arunachalam, Florian Wimmers, Chris Ka Pun Mok, Ranawaka A P M Perera, Madeleine Scott, John Coller

Science· September 2020

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Atheroprotective roles of smooth muscle cell phenotypic modulation and the TCF21 disease gene as revealed by single-cell analysis.
Robert C Wirka, Dhananjay Wagh, David T Paik, Milos Pjanic, Trieu Nguyen, John Coller

Nat Med· August 2019

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Workflow optimization of whole genome amplification and targeted panel sequencing for CTC mutation detection.
Haiyan E Liu, Melanie Triboulet, Amin Zia, Meghah Vuppalapaty, Evelyn Kidess-Sigal, John Coller

NPJ Genom Med· November 2017

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Combinatorial Extracellular Matrix Microenvironments for Probing Endothelial Differentiation of Human Pluripotent Stem Cells.
Luqia Hou, Joseph J Kim, Maureen Wanjare, Bhagat Patlolla, John Coller

Sci Rep· July 2017

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Combinatorial extracellular matrix microenvironments promote survival and phenotype of human induced pluripotent stem cell-derived endothelial cells in hypoxia.
Luqia Hou, John Coller, Vanita Natu, Trevor J Hastie, Ngan F Huang

Acta Biomater· October 2016

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High-throughput allogeneic antibody detection using protein microarrays.
Jed Paul, Bita Sahaf, Spenser Perloff, Kelsi Schoenrock, Fang Wu, John Coller

J Immunol Methods· May 2016

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Allogeneic HY antibodies detected 3 months after female-to-male HCT predict chronic GVHD and nonrelapse mortality in humans.
Hideki Nakasone, Lu Tian, Bita Sahaf, Takakazu Kawase, Kelsi Schoenrock, John Coller

Blood· May 2015

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Mechanisms of resistance to cabazitaxel.
George E Duran, Yan C Wang, E Brian Francisco, John C Rose, Francisco J Martinez, John Coller

Mol Cancer Ther· January 2015

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Long-term durability of sacral nerve stimulation therapy for chronic fecal incontinence.
Tracy Hull, Chad Giese, Steven D Wexner, Anders Mellgren, Ghislain Devroede, John A Coller

Dis Colon Rectum· February 2013

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Quality of life is markedly improved in patients with fecal incontinence after sacral nerve stimulation.
Ghislain Devroede, Chad Giese, Steven D Wexner, Anders Mellgren, John A Coller

Female Pelvic Med Reconstr Surg· May 2012

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Long-term efficacy and safety of sacral nerve stimulation for fecal incontinence.
Anders Mellgren, Steven D Wexner, John A Coller, Ghislain Devroede, Darin R Lerew

Dis Colon Rectum· September 2011

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The essential genome of a bacterium.
Beat Christen, Eduardo Abeliuk, John M Collier, Virginia S Kalogeraki, Ben Passarelli, John A Coller

Mol Syst Biol· August 2011

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Network modeling reveals prevalent negative regulatory relationships between signaling sectors in Arabidopsis immune signaling.
Masanao Sato, Kenichi Tsuda, Lin Wang, John Coller, Yuichiro Watanabe

PLoS Pathog· July 2010

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