Publications by authors named "John Wakeley"

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Correlation of coalescence times in a diploid Wright-Fisher model with recombination and selfing.
David Kogan, Dimitrios Diamantidis, John Wakeley, Louis Wai-Tong Fan

Theor Popul Biol· December 2025

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Conditional gene genealogies given the population pedigree for a diploid Moran model with selfing.
Maximillian Newman, John Wakeley, Wai-Tong Louis Fan

Theor Popul Biol· October 2025

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Latent mutations in the ancestries of alleles under selection.
Wai-Tong Louis Fan, John Wakeley

Theor Popul Biol· August 2024

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Bursts of coalescence within population pedigrees whenever big families occur.
Dimitrios Diamantidis, Wai-Tong Louis Fan, Matthias Birkner, John Wakeley

Genetics· May 2024

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TRAILS: Tree reconstruction of ancestry using incomplete lineage sorting.
Iker Rivas-González, Mikkel H Schierup, John Wakeley, Asger Hobolth

PLoS Genet· February 2024

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Recurrent mutation in the ancestry of a rare variant.
John Wakeley, Wai-Tong Louis Fan, Evan Koch, Shamil Sunyaev

Genetics· July 2023

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Evaluating the structure-coefficient theorem of evolutionary game theory.
Alex McAvoy, John Wakeley

Proc Natl Acad Sci U S A· July 2022

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Assessing the performance of qpAdm: a statistical tool for studying population admixture.
Éadaoin Harney, Nick Patterson, David Reich, John Wakeley

Genetics· April 2021

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The consequences of switching strategies in a two-player iterated survival game.
Olivier Salagnac, John Wakeley

J Math Biol· February 2021

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Developments in coalescent theory from single loci to chromosomes.
John Wakeley

Theor Popul Biol· June 2020

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Bayesian Estimation of Population Size Changes by Sampling Tajima's Trees.
Julia A Palacios, Amandine Véber, Lorenzo Cappello, Zhangyuan Wang, John Wakeley

Genetics· November 2019

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Genomic architecture and introgression shape a butterfly radiation.
Nathaniel B Edelman, Paul B Frandsen, Miriam Miyagi, Bernardo Clavijo, John Davey, John Wakeley

Science· November 2019

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Some topics in theoretical population genetics: Editorial commentaries on a selection of Marc Feldman's TPB papers.
Lee Altenberg, Nicole Creanza, Laurel Fogarty, Lilach Hadany, Oren Kolodny, John Wakeley

Theor Popul Biol· October 2019

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A two-player iterated survival game.
John Wakeley, Martin Nowak

Theor Popul Biol· February 2019

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A non-zero variance of Tajima's estimator for two sequences even for infinitely many unlinked loci.
Léandra King, John Wakeley, Shai Carmi

Theor Popul Biol· July 2018

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Public goods games in populations with fluctuating size.
Alex McAvoy, Nicolas Fraiman, Christoph Hauert, John Wakeley, Martin A Nowak

Theor Popul Biol· May 2018

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Population structure and coalescence in pedigrees: Comparisons to the structured coalescent and a framework for inference.
Peter R Wilton, Pierre Baduel, Matthieu M Landon, John Wakeley

Theor Popul Biol· June 2017

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Taking Exception to Human Eugenics.
Frederick P Roth, John Wakeley

Genetics· October 2016

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Empirical Bayes Estimation of Coalescence Times from Nucleotide Sequence Data.
Leandra King, John Wakeley

Genetics· September 2016

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Effects of the population pedigree on genetic signatures of historical demographic events.
John Wakeley, Léandra King, Peter R Wilton

Proc Natl Acad Sci U S A· July 2016

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Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates.
Pier Francesco Palamara, Laurent C Francioli, Peter R Wilton, Giulio Genovese, Alexander Gusev, John Wakeley

Am J Hum Genet· December 2015

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Bayesian Nonparametric Inference of Population Size Changes from Sequential Genealogies.
Julia A Palacios, John Wakeley, Sohini Ramachandran

Genetics· September 2015

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A renewal theory approach to IBD sharing.
Shai Carmi, Peter R Wilton, John Wakeley, Itsik Pe'er

Theor Popul Biol· November 2014

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Loss and recovery of genetic diversity in adapting populations of HIV.
Pleuni S Pennings, Sergey Kryazhimskiy, John Wakeley

PLoS Genet· January 2014

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Coalescent theory has many new branches.
John Wakeley

Theor Popul Biol· August 2013

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