Publications by authors named "John Weinstein"

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A Novel Longitudinal Clinical Experience in Physician Assistant Education.
Allisyn M Brady, John R Weinstein, Angela C Reffel, Aliza A Stern, Tara A Singh

J Physician Assist Educ· December 2025

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Single-Sample, Multiomic Mass Spectrometry for Investigating Drug Effects and Mechanisms.
Iqbal Mahmud, Wai-Kin Chan, Karen Yannell, Cate Simmermaker, Genevieve C Van de Bittner, John N Weinstein

J Proteome Res· September 2025

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The glutaminase activity of ASNS fuels glutamine metabolism in leukemia.
Wai-Kin Chan, Lin Tan, Sara A Martinez, Di Du, Thomas D Horvath, John N Weinstein

Haematologica· September 2025

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COVID-19 related personal protective equipment (PPE) litter in salt marsh habitats: Degradation and microplastic emission.
Jessica T Wenclawiak, John E Weinstein, Jerry Higgins, Douglas Karam, Bonnie Ertel

Environ Res· July 2025

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Somatic copy number deletion of chromosome 22q in papillary thyroid carcinoma.
Olivia W Lee, Danielle M Karyadi, Stephen W Hartley, Weyin Zhou, Mitchell J Machiela, John N Weinstein

Eur Thyroid J· February 2025

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Ion suppression correction and normalization for non-targeted metabolomics.
Iqbal Mahmud, Bo Wei, Lucas Veillon, Lin Tan, Sara Martinez, John N Weinstein

Nat Commun· February 2025

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Single-sample, multi-omic mass spectrometry for investigating mechanisms of drug toxicity.
Iqbal Mahmud, Wai-Kin Chan, Karen Yannell, Cate Simmermaker, Genevieve Van de Bittner, John N Weinstein

bioRxiv· February 2025

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A deconvolution framework that uses single-cell sequencing plus a small benchmark data set for accurate analysis of cell type ratios in complex tissue samples.
Shuai Guo, Xiaoqian Liu, Xuesen Cheng, Yujie Jiang, Shuangxi Ji, John N Weinstein

Genome Res· January 2025

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Effects of Vibrio vulnificus and Microcystis aeruginosa co-exposures on microplastic accumulation and depuration in the Eastern Oyster (Crassostrea virginica).
Jessica T Wenclawiak, John E Weinstein, Peter B Key, Craig J Plante, Barbara A Beckingham

Environ Pollut· October 2024

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Ultra-Fast Multi-Organ Proteomics Unveils Tissue-Specific Mechanisms of Drug Efficacy and Toxicity.
Yun Xiong, Lin Tan, Wai-Kin Chan, Eric S Yin, Sri Ramya Donepudi, John N Weinstein

bioRxiv· October 2024

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First evidence of microplastic inhalation among free-ranging small cetaceans.
Miranda K Dziobak, Andreas Fahlman, Randall S Wells, Ryan Takeshita, Cynthia Smith, John Weinstein

PLoS One· October 2024

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Single-cell chromatin accessibility reveals malignant regulatory programs in primary human cancers.
Laksshman Sundaram, Arvind Kumar, Matthew Zatzman, Adriana Salcedo, Neal Ravindra, John N Weinstein

Science· September 2024

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An analysis of suspected microplastics in the muscle and gastrointestinal tissues of fish from Sarasota Bay, FL: exposure and implications for apex predators and seafood consumers.
Eric Conger, Miranda Dziobak, Elizabeth J Berens McCabe, Tita Curtin, Ayushi Gaur, John E Weinstein

Environments· September 2024

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An IROA Workflow for correction and normalization of ion suppression in mass spectrometry-based metabolomic profiling data.
Iqbal Mahmud, Bo Wei, Lucas Veillon, Lin Tan, Sara Martinez, John N Weinstein

Res Sq· February 2024

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PCA-Plus: Enhanced principal component analysis with illustrative applications to batch effects and their quantitation.
Nianxiang Zhang, Tod D Casasent, Anna K Casasent, Shwetha V Kumar, Chris Wakefield, John N Weinstein

bioRxiv· January 2024

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RETRACTED: Liu et al. Prediction of Ovarian Cancer Response to Therapy Based on Deep Learning Analysis of Histopathology Images. 2023, , 4044.
Yuexin Liu, Barrett C Lawson, Xuelin Huang, Bradley M Broom, John N Weinstein

Cancers (Basel)· January 2024

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Plastic, It's What's for Dinner: A Preliminary Comparison of Ingested Particles in Bottlenose Dolphins and Their Prey.
Leslie B Hart, Miranda Dziobak, Randall S Wells, Elizabeth Berens McCabe, Eric Conger, John Weinstein

Oceans (Basel)· December 2023

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DeMixSC: a deconvolution framework that uses single-cell sequencing plus a small benchmark dataset for improved analysis of cell-type ratios in complex tissue samples.
Shuai Guo, Xiaoqian Liu, Xuesen Cheng, Yujie Jiang, Shuangxi Ji, John N Weinstein

bioRxiv· November 2023

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Rising seas and roadway debris: Microplastic and low-density tire wear particles in street-associated tidal floodwater.
Bonnie M Ertel, John E Weinstein, Austin D Gray

Mar Pollut Bull· October 2023

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Prevalence and distribution of personal protective equipment (PPE) litter along the shoreline of Charleston Harbor estuary, South Carolina, USA.
Jessica T Wenclawiak, John E Weinstein

Mar Pollut Bull· October 2023

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Prediction of Ovarian Cancer Response to Therapy Based on Deep Learning Analysis of Histopathology Images.
Yuexin Liu, Barrett C Lawson, Xuelin Huang, Bradley M Broom, John N Weinstein

Cancers (Basel)· August 2023

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Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers.
Yuan Yuan, Young Seok Ju, Youngwook Kim, Jun Li, Yumeng Wang, John N Weinstein

Nat Genet· June 2023

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Ether phospholipids are required for mitochondrial reactive oxygen species homeostasis.
Ziheng Chen, I-Lin Ho, Melinda Soeung, Er-Yen Yen, Jintan Liu, John N Weinstein

Nat Commun· April 2023

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Spatial and temporal variability of microplastic abundance in estuarine intertidal sediments: Implications for sampling frequency.
Rachel R Leads, John E Weinstein, Sarah E Kell, Johnathan M Overcash, Bonnie M Ertel

Sci Total Environ· February 2023

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RPPA SPACE: an R package for normalization and quantitation of Reverse-Phase Protein Array data.
Huma Shehwana, Shwetha V Kumar, James M Melott, Mary A Rohrdanz, Chris Wakefield, John N Weinstein

Bioinformatics· November 2022

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