Publications by authors named "Jon Ison"

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BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Bilal Shaikh, Lucian P Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Jon C Ison

Nucleic Acids Res· July 2022

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Perspectives on automated composition of workflows in the life sciences.
Anna-Lena Lamprecht, Magnus Palmblad, Jon Ison, Veit Schwämmle, Mohammad Sadnan Al Manir

F1000Res· December 2021

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APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry.
Vedran Kasalica, Veit Schwämmle, Magnus Palmblad, Jon Ison, Anna-Lena Lamprecht

J Proteome Res· April 2021

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biotoolsSchema: a formalized schema for bioinformatics software description.
Jon Ison, Hans Ienasescu, Emil Rydza, Piotr Chmura, Kristoffer Rapacki

Gigascience· January 2021

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Community curation of bioinformatics software and data resources.
Jon Ison, Hervé Ménager, Bryan Brancotte, Erik Jaaniso, Ahto Salumets

Brief Bioinform· September 2020

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JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools.
Marcel Friedrichs, Alban Shoshi, Piotr Jaroslaw Chmura, Jon Ison, Veit Schwämmle

J Integr Bioinform· January 2020

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One Thousand and One Software for Proteomics: Tales of the Toolmakers of Science.
Vasileios Tsiamis, Hans-Ioan Ienasescu, Dovydas Gabrielaitis, Magnus Palmblad, Veit Schwämmle, Jon Ison

J Proteome Res· October 2019

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The bio.tools registry of software tools and data resources for the life sciences.
Jon Ison, Hans Ienasescu, Piotr Chmura, Emil Rydza, Hervé Ménager

Genome Biol· August 2019

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Automated workflow composition in mass spectrometry-based proteomics.
Magnus Palmblad, Anna-Lena Lamprecht, Jon Ison, Veit Schwämmle

Bioinformatics· February 2019

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Using bio.tools to generate and annotate workbench tool descriptions.
Kenzo-Hugo Hillion, Ivan Kuzmin, Anton Khodak, Eric Rasche, Michael Crusoe, Jon Ison

F1000Res· November 2017

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ReGaTE: Registration of Galaxy Tools in Elixir.
Olivia Doppelt-Azeroual, Fabien Mareuil, Eric Deveaud, Matúš Kalaš, Nicola Soranzo, Jon Ison

Gigascience· June 2017

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Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.
Julie A McMurry, Nick Juty, Niklas Blomberg, Tony Burdett, Tom Conlin, Jon C Ison

PLoS Biol· June 2017

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Four simple recommendations to encourage best practices in research software.
Rafael C Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Madison Flannery, Jon Ison

F1000Res· June 2017

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Tools and data services registry: a community effort to document bioinformatics resources.
Jon Ison, Kristoffer Rapacki, Hervé Ménager, Matúš Kalaš, Emil Rydza

Nucleic Acids Res· January 2016

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The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation.
James Malone, Andy Brown, Allyson L Lister, Jon Ison, Duncan Hull

J Biomed Semantics· July 2014

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EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.
Jon Ison, Matús Kalas, Inge Jonassen, Dan Bolser, Mahmut Uludag

Bioinformatics· May 2013

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ArrayExpress update--trends in database growth and links to data analysis tools.
Gabriella Rustici, Nikolay Kolesnikov, Marco Brandizi, Tony Burdett, Miroslaw Dylag, Jon Ison

Nucleic Acids Res· January 2013

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BioXSD: the common data-exchange format for everyday bioinformatics web services.
Matús Kalas, Pål Puntervoll, Alexandre Joseph, Edita Bartaseviciūte, Armin Töpfer, Jon Ison

Bioinformatics· September 2010

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The EMBRACE web service collection.
Steve Pettifer, Jon Ison, Matús Kalas, Dave Thorne, Philip McDermott

Nucleic Acids Res· July 2010

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ROCPLOT: a generic software tool for ROC analysis and the validation of predictive methods.
Jon C Ison, Matthew J Blades

Appl Bioinformatics· December 2005

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Survey of the geometric association of domain-domain interfaces.
Wan Kyu Kim, Jon C Ison

Proteins· December 2005

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Automatic generation and evaluation of sparse protein signatures for families of protein structural domains.
Matthew J Blades, Jon C Ison, Ranjeeva Ranasinghe, John B C Findlay

Protein Sci· January 2005

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