Publications by authors named "Gabriella Rustici"

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Implementation of a data science and artificial intelligence strategy across pharmaceutical R&D: challenges and solutions.
Vincenzo Garzya, Gabriella Rustici, Tom Diethe, Peder Blomgren, Nina Mian

Drug Discov Today· December 2025

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Microarray-Based Quality Assessment as a Supporting Criterion for de novo Transcriptome Assembly Selection.
Patricia Carvajal-Lopez, Fernando D Von Borstel, Amada Torres, Gabriella Rustici, Joaquin Gutierrez

IEEE/ACM Trans Comput Biol Bioinform· January 2021

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A framework to assess the quality and impact of bioinformatics training across ELIXIR.
Kim T Gurwitz, Prakash Singh Gaur, Louisa J Bellis, Lee Larcombe, Eva Alloza, Gabriella Rustici

PLoS Comput Biol· July 2020

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Ten simple rules for making training materials FAIR.
Leyla Garcia, Bérénice Batut, Melissa L Burke, Mateusz Kuzak, Fotis Psomopoulos, Gabriella Rustici

PLoS Comput Biol· May 2020

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An intrinsically disordered proteins community for ELIXIR.
Norman E Davey, M Madan Babu, Martin Blackledge, Alan Bridge, Salvador Capella-Gutierrez, Gabriella Rustici

F1000Res· January 2020

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A new pan-European Train-the-Trainer programme for bioinformatics: pilot results on feasibility, utility and sustainability of learning.
Allegra Via, Teresa K Attwood, Pedro L Fernandes, Sarah L Morgan, Maria Victoria Schneider, Gabriella Rustici

Brief Bioinform· March 2019

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Publisher Correction: Image Data Resource: a bioimage data integration and publication platform.
Eleanor Williams, Josh Moore, Simon W Li, Gabriella Rustici, Aleksandra Tarkowska

Nat Methods· November 2018

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The development and application of bioinformatics core competencies to improve bioinformatics training and education.
Nicola Mulder, Russell Schwartz, Michelle D Brazas, Cath Brooksbank, Bruno Gaeta, Gabriella Rustici

PLoS Comput Biol· February 2018

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The cellular microscopy phenotype ontology.
Simon Jupp, James Malone, Tony Burdett, Jean-Karim Heriche, Eleanor Williams, Gabriella Rustici

J Biomed Semantics· November 2017

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The Image Data Resource: A Bioimage Data Integration and Publication Platform.
Eleanor Williams, Josh Moore, Simon W Li, Gabriella Rustici, Aleksandra Tarkowska

Nat Methods· August 2017

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The ELIXIR-EXCELERATE Train-the-Trainer pilot programme: empower researchers to deliver high-quality training.
Sarah L Morgan, Patricia M Palagi, Pedro L Fernandes, Eija Koperlainen, Jure Dimec, Gabriella Rustici

F1000Res· August 2017

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The digital revolution in phenotyping.
Anika Oellrich, Nigel Collier, Tudor Groza, Dietrich Rebholz-Schuhmann, Nigam Shah, Gabriella Rustici

Brief Bioinform· September 2016

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Training in High-Throughput Sequencing: Common Guidelines to Enable Material Sharing, Dissemination, and Reusability.
Bastian Schiffthaler, Myrto Kostadima, , Nicolas Delhomme, Gabriella Rustici

PLoS Comput Biol· June 2016

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Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee).
Lonnie Welch, Cath Brooksbank, Russell Schwartz, Sarah L Morgan, Bruno Gaeta, Gabriella Rustici

PLoS Comput Biol· May 2016

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Metadata management for high content screening in OMERO.
Simon Li, Sébastien Besson, Colin Blackburn, Mark Carroll, Richard K Ferguson, Gabriella Rustici

Methods· March 2016

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Cellular phenotype database: a repository for systems microscopy data.
Catherine Kirsanova, Alvis Brazma, Gabriella Rustici, Ugis Sarkans

Bioinformatics· August 2015

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Tumor cell migration screen identifies SRPK1 as breast cancer metastasis determinant.
Wies van Roosmalen, Sylvia E Le Dévédec, Ofra Golani, Marcel Smid, Irina Pulyakhina, Gabriella Rustici

J Clin Invest· April 2015

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ArrayExpress update--simplifying data submissions.
Nikolay Kolesnikov, Emma Hastings, Maria Keays, Olga Melnichuk, Y Amy Tang, Gabriella Rustici

Nucleic Acids Res· January 2015

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Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.
Robert Petryszak, Tony Burdett, Benedetto Fiorelli, Nuno A Fonseca, Mar Gonzalez-Porta, Gabriella Rustici

Nucleic Acids Res· January 2014

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The challenges of delivering bioinformatics training in the analysis of high-throughput data.
Benilton S Carvalho, Gabriella Rustici

Brief Bioinform· September 2013

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ArrayExpress update--trends in database growth and links to data analysis tools.
Gabriella Rustici, Nikolay Kolesnikov, Marco Brandizi, Tony Burdett, Miroslaw Dylag

Nucleic Acids Res· January 2013

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Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology.
Robert Hoehndorf, Midori A Harris, Heinrich Herre, Gabriella Rustici, Georgios V Gkoutos

Bioinformatics· July 2012

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Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments.
Misha Kapushesky, Tomasz Adamusiak, Tony Burdett, Aedin Culhane, Anna Farne, Gabriella Rustici

Nucleic Acids Res· January 2012

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ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments.
Helen Parkinson, Ugis Sarkans, Nikolay Kolesnikov, Niran Abeygunawardena, Tony Burdett, Gabriella Rustici

Nucleic Acids Res· January 2011

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Gene expression atlas at the European bioinformatics institute.
Misha Kapushesky, Ibrahim Emam, Ele Holloway, Pavel Kurnosov, Andrey Zorin, Gabriella Rustici

Nucleic Acids Res· January 2010

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