Publications by authors named "Jonathan Binkley"

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The Candida Genome Database: annotation and visualization updates.
Jodi Lew-Smith, Jonathan Binkley, Gavin Sherlock

Genetics· March 2025

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How to Use the Candida Genome Database.
Marek S Skrzypek, Jonathan Binkley, Gavin Sherlock

Methods Mol Biol· August 2022

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Using the Candida Genome Database.
Marek S Skrzypek, Jonathan Binkley, Gavin Sherlock

Methods Mol Biol· January 2019

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The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data.
Marek S Skrzypek, Jonathan Binkley, Gail Binkley, Stuart R Miyasato, Matt Simison

Nucleic Acids Res· January 2017

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How to Use the Candida Genome Database.
Marek S Skrzypek, Jonathan Binkley, Gavin Sherlock

Methods Mol Biol· May 2016

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The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny.
Jonathan Binkley, Martha B Arnaud, Diane O Inglis, Marek S Skrzypek, Prachi Shah, Gail Binkley

Nucleic Acids Res· January 2014

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The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.
Gustavo C Cerqueira, Martha B Arnaud, Diane O Inglis, Marek S Skrzypek, Gail Binkley, Jonathan Binkley

Nucleic Acids Res· January 2014

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Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae.
Diane O Inglis, Jonathan Binkley, Marek S Skrzypek, Martha B Arnaud, Gustavo C Cerqueira

BMC Microbiol· April 2013

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Improved gene ontology annotation for biofilm formation, filamentous growth, and phenotypic switching in Candida albicans.
Diane O Inglis, Marek S Skrzypek, Martha B Arnaud, Jonathan Binkley, Prachi Shah

Eukaryot Cell· January 2013

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The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata.
Diane O Inglis, Martha B Arnaud, Jonathan Binkley, Prachi Shah, Marek S Skrzypek, Gail Binkley

Nucleic Acids Res· January 2012

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The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.
Martha B Arnaud, Gustavo C Cerqueira, Diane O Inglis, Marek S Skrzypek, Jonathan Binkley, Gail Binkley

Nucleic Acids Res· January 2012

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A cell cycle phosphoproteome of the yeast centrosome.
Jamie M Keck, Michele H Jones, Catherine C L Wong, Jonathan Binkley, Daici Chen

Science· June 2011

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Functional analyses of variants reveal a significant role for dominant negative and common alleles in oligogenic Bardet-Biedl syndrome.
Norann A Zaghloul, Yangjian Liu, Jantje M Gerdes, Cecilia Gascue, Edwin C Oh, Jonathan Binkley

Proc Natl Acad Sci U S A· June 2010

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ProPhylER: a curated online resource for protein function and structure based on evolutionary constraint analyses.
Jonathan Binkley, Kalpana Karra, Andrew Kirby, Midori Hosobuchi, Eric A Stone

Genome Res· January 2010

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Identification of the Otopetrin Domain, a conserved domain in vertebrate otopetrins and invertebrate otopetrin-like family members.
Inna Hughes, Jonathan Binkley, Belen Hurle, Eric D Green,

BMC Evol Biol· February 2008

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Structural and molecular evolutionary analysis of Agouti and Agouti-related proteins.
Pilgrim J Jackson, Nick R Douglas, Biaoxin Chai, Jonathan Binkley, Arend Sidow

Chem Biol· December 2006

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A novel His158Arg mutation in TIMP3 causes a late-onset form of Sorsby fundus dystrophy.
Ruth J Lin, Mark S Blumenkranz, Jonathan Binkley, Kathy Wu, Douglas Vollrath

Am J Ophthalmol· November 2006

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The integrity of a cholesterol-binding pocket in Niemann-Pick C2 protein is necessary to control lysosome cholesterol levels.
Dennis C Ko, Jonathan Binkley, Arend Sidow, Matthew P Scott

Proc Natl Acad Sci U S A· March 2003

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