Publications by authors named "Jonathan Clayton"

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Assessing gut microbial provisioning of essential amino acids to host in a mouse model with reconstituted gut microbiomes.
Paul Ayayee, Gordon Custer, Jonathan Brent Clayton, Jeff Price, Amanda Ramer-Tait

Commun Biol· November 2025

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Editorial: Reviews in gut-brain axis: stress, dysregulation in gut-brain axis function and stress related disorders.
Zuleide Maria Ignácio, Jonathan B Clayton, Margarete Dulce Bagatini, Avinash Veerappa

Front Neurosci· September 2025

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Microbiome and metabolome association network analysis identifies as a stronger keystone genus candidate than in the gut of common marmosets.
Jordan B Hernandez, Shivdeep S Hayer, Sophie Alvarez, Anne Fischer, Haley R Hassenstab, Jonathan B Clayton

mSystems· August 2025

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Assessing gut microbial provisioning of essential amino acids to host in a murine model with reconstituted gut microbiomes.
Paul Ayayee, Gordon Custer, Jonathan B Clayton, Jeff Price, Amanda Ramer-Tait

Res Sq· March 2025

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Biomarker-Guided Antibiotic Duration for Hospitalized Patients With Suspected Sepsis: The ADAPT-Sepsis Randomized Clinical Trial.
Paul Dark, Anower Hossain, Daniel F McAuley, David Brealey, Gordon Carlson, Jonathan C Clayton

JAMA· February 2025

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Cardiometabolic disease risk in gorillas is associated with altered gut microbial metabolism.
Samuel Davison, Anna Mascellani Bergo, Zoe Ward, April Sackett, Anna Strykova, Jonathan B Clayton

NPJ Biofilms Microbiomes· February 2025

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Antibiotic-induced gut dysbiosis elicits gut-brain axis relevant multi-omic signatures and behavioral and neuroendocrine changes in a nonhuman primate model.
Shivdeep S Hayer, Mackenzie Conrin, Jeffrey A French, Andrew K Benson, Sophie Alvarez, Jonathan B Clayton

Gut Microbes· January 2024

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Hematology and blood biochemistry in a declining population of mantled howler monkeys (Alouatta palliata palliata) at La Pacifica, Costa Rica.
Lisa C Corewyn, Mary A Kelaita, Jenny Nollman, Isabel Hagnauer, Kinndle Blanco-Peña, Jonathan B Clayton

J Med Primatol· December 2023

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Serum cortisol assay performance following the 1 mg overnight dexamethasone suppression test.
Jonathan S Atkins, James M Hawley, Laura J Owen, Jonathan Clayton, Jonathan Scargill

Ann Clin Biochem· November 2023

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biomArker-guided Duration of Antibiotic treatment in hospitalised Patients with suspecTed Sepsis (ADAPT-Sepsis): A protocol for a multicentre randomised controlled trial.
Paul Dark, Gavin D Perkins, Ronan McMullan, Danny McAuley, Anthony C Gordon, Jonathan Clayton

J Intensive Care Soc· November 2023

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Antibiotic-induced gut dysbiosis and cognitive, emotional, and behavioral changes in rodents: a systematic review and meta-analysis.
Shivdeep S Hayer, Soonjo Hwang, Jonathan B Clayton

Front Neurosci· September 2023

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Informatics for your Gut: at the Interface of Nutrition, the Microbiome, and Technology.
Kate Cooper, Martina Clarke, Jonathan B Clayton

Yearb Med Inform· August 2023

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Gut Site and Gut Morphology Predict Microbiome Structure and Function in Ecologically Diverse Lemurs.
Lydia K Greene, Erin A McKenney, William Gasper, Claudia Wrampelmeier, Shivdeep Hayer, Jonathan B Clayton

Microb Ecol· May 2023

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Design, Biological Evaluation, and Computer-Aided Analysis of Dihydrothiazepines as Selective Antichlamydial Agents.
Luana Janaína de Campos, Mohamed A Seleem, Jiachen Feng, Kelly Mari Pires de Oliveira, João Víctor de Andrade Dos Santos, Jonathan B Clayton

J Med Chem· February 2023

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The primate gut mycobiome-bacteriome interface is impacted by environmental and subsistence factors.
Ashok K Sharma, Sam Davison, Barbora Pafco, Jonathan B Clayton, Jessica M Rothman

NPJ Biofilms Microbiomes· March 2022

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Interspecies variation in hominid gut microbiota controls host gene regulation.
Amanda L Muehlbauer, Allison L Richards, Adnan Alazizi, Michael B Burns, Andres Gomez, Jonathan B Clayton

Cell Rep· November 2021

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Host Identity and Geographic Location Significantly Affect Gastrointestinal Microbial Richness and Diversity in Western Lowland Gorillas () under Human Care.
Katrina Eschweiler, Jonathan B Clayton, Anneke Moresco, Erin A McKenney, Larry J Minter

Animals (Basel)· November 2021

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Calprotectin (S100A8/A9) Is an Innate Immune Effector in Experimental Periodontitis.
Karen F Johnstone, Yuping Wei, Peter D Bittner-Eddy, Gerrit W Vreeman, Ian A Stone, Jonathan B Clayton

Infect Immun· September 2021

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Alteration of the Gut Microbiome in Normal and Overweight School Children from Selangor with Fermented Milk Administration.
Narcisse Joseph, Jonathan B Clayton, Susan L Hoops, Carter A Linhardt, Amalia Mohd Hashim

Evol Bioinform Online· November 2020

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Genetic Determinants of Resistance to Extended-Spectrum Cephalosporin and Fluoroquinolone in Escherichia coli Isolated from Diseased Pigs in the United States.
Shivdeep Singh Hayer, Seunghyun Lim, Samuel Hong, Ehud Elnekave, Timothy Johnson, Jonathan B Clayton

mSphere· October 2020

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Wild primate microbiomes prevent weight gain in germ-free mice.
Dimitrios N Sidiropoulos, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Tonya L Ward, Abigail J Johnson, Jonathan B Clayton

Anim Microbiome· May 2020

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Sex Bias in Gut Microbiome Transmission in Newly Paired Marmosets (Callithrix jacchus).
Lifeng Zhu, Jonathan B Clayton, Mallory J Suhr Van Haute, Qinnan Yang, Haley R Hassenstab

mSystems· March 2020

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Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus).
Jonathan B Clayton, Robin R Shields-Cutler, Susan L Hoops, Gabriel A Al-Ghalith, John C M Sha

Am J Primatol· October 2019

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Antibiotics and Host-Tailored Probiotics Similarly Modulate Effects on the Developing Avian Microbiome, Mycobiome, and Host Gene Expression.
Tonya L Ward, Bonnie P Weber, Kristelle M Mendoza, Jessica L Danzeisen, Katharine Llop, Jonathan B Clayton

mBio· October 2019

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Local habitat, not phylogenetic relatedness, predicts gut microbiota better within folivorous than frugivorous lemur lineages.
Lydia K Greene, Jonathan B Clayton, Ryan S Rothman, Brandon P Semel, Meredith A Semel

Biol Lett· June 2019

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