Publications by authors named "Jonathan J Ellis"

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Prostaglandin E2/EP4 axis is upregulated in Spondyloarthritis and contributes to radiographic progression.
Daniele Mauro, Archita Srinath, Giuliana Guggino, Vicky Nicolaidou, Stefania Raimondo, Jonathan J Ellis

Clin Immunol· June 2023

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Genotype by sex interactions in ankylosing spondylitis.
Zhixiu Li, Allan F McRae, Geng Wang, Jonathan J Ellis, Jessica Whyte

Nat Genet· January 2023

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Analysis of human leukocyte antigen associations in human papillomavirus-positive and -negative head and neck cancer: Comparison with cervical cancer.
Chameera Ekanayake Weeramange, Danhua Shu, Kai Dun Tang, Jyotsna Batra, Rahul Ladwa, Jonathan J Ellis

Cancer· May 2022

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Polygenic Risk Scores Stratify Keratinocyte Cancer Risk among Solid Organ Transplant Recipients with Chronic Immunosuppression in a High Ultraviolet Radiation Environment.
Mathias Seviiri, Matthew H Law, Jue Sheng Ong, Puya Gharahkhani, Dale R Nyholt, Jonathan J Ellis

J Invest Dermatol· December 2021

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Inflammasome Activation in Ankylosing Spondylitis Is Associated With Gut Dysbiosis.
Giuliana Guggino, Daniele Mauro, Aroldo Rizzo, Riccardo Alessandro, Stefania Raimondo, Jonathan J Ellis

Arthritis Rheumatol· July 2021

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Chromosome arm aneuploidies shape tumour evolution and drug response.
Ankit Shukla, Thu H M Nguyen, Sarat B Moka, Jonathan J Ellis, John P Grady

Nat Commun· January 2020

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Whole-genome sequencing of human malignant mesothelioma tumours and cell lines.
Harald Oey, Marissa Daniels, Vandana Relan, Tian Mun Chee, Morgan R Davidson, Jonathan J Ellis

Carcinogenesis· July 2019

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Best practices in DNA methylation: lessons from inflammatory bowel disease, psoriasis and ankylosing spondylitis.
Jessica M Whyte, Jonathan J Ellis, Matthew A Brown, Tony J Kenna

Arthritis Res Ther· June 2019

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Comprehensive genetic screening: The prevalence of maturity-onset diabetes of the young gene variants in a population-based childhood diabetes cohort.
Stephanie R Johnson, Jonathan J Ellis, Paul J Leo, Lisa K Anderson, Uma Ganti

Pediatr Diabetes· February 2019

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Calypso: a user-friendly web-server for mining and visualizing microbiome-environment interactions.
Martha Zakrzewski, Carla Proietti, Jonathan J Ellis, Shihab Hasan, Marie-Jo Brion

Bioinformatics· March 2017

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RNA-Seq analysis of chikungunya virus infection and identification of granzyme A as a major promoter of arthritic inflammation.
Jane A C Wilson, Natalie A Prow, Wayne A Schroder, Jonathan J Ellis, Helen E Cumming

PLoS Pathog· February 2017

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Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.
Yuan Zhou, Gu Zhu, Jac C Charlesworth, Steve Simpson, Rohina Rubicz, Jonathan J Ellis

Mult Scler· November 2016

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STAT5 Activation in the Dermal Papilla Is Important for Hair Follicle Growth Phase Induction.
Julien M D Legrand, Edwige Roy, Jonathan J Ellis, Mathias Francois, Andrew J Brooks

J Invest Dermatol· September 2016

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SerpinB2 Deficiency Results in a Stratum Corneum Defect and Increased Sensitivity to Topically Applied Inflammatory Agents.
Wayne A Schroder, Itaru Anraku, Thuy T Le, Thiago D C Hirata, Helder I Nakaya, Jonathan J Ellis

Am J Pathol· June 2016

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A novel ATM-dependent checkpoint defect distinct from loss of function mutation promotes genomic instability in melanoma.
Loredana Spoerri, Kelly Brooks, KeeMing Chia, Gavriel Grossman, Jonathan J Ellis

Pigment Cell Melanoma Res· May 2016

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Dynamics of re-constitution of the human nuclear proteome after cell division is regulated by NLS-adjacent phosphorylation.
Gergely Róna, Máté Borsos, Jonathan J Ellis, Ahmed M Mehdi, Mary Christie

Cell Cycle· September 2015

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A bioinformatics tool for epitope-based vaccine design that accounts for human ethnic diversity: application to emerging infectious diseases.
Patricio Oyarzun, Jonathan J Ellis, Faviel F Gonzalez-Galarza, Andrew R Jones, Derek Middleton

Vaccine· March 2015

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Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation.
Arne W Mould, Zhenyi Pang, Miha Pakusch, Ian D Tonks, Mitchell Stark, Jonathan J Ellis

Epigenetics Chromatin· July 2013

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PREDIVAC: CD4+ T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity.
Patricio Oyarzún, Jonathan J Ellis, Mikael Bodén, Boštjan Kobe

BMC Bioinformatics· February 2013

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Predicting protein kinase specificity: Predikin update and performance in the DREAM4 challenge.
Jonathan J Ellis, Boštjan Kobe

PLoS One· December 2011

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Frequent somatic mutations in MAP3K5 and MAP3K9 in metastatic melanoma identified by exome sequencing.
Mitchell S Stark, Susan L Woods, Michael G Gartside, Vanessa F Bonazzi, Ken Dutton-Regester, Jonathan J Ellis

Nat Genet· December 2011

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Molecular basis for specificity of nuclear import and prediction of nuclear localization.
Mary Marfori, Andrew Mynott, Jonathan J Ellis, Ahmed M Mehdi, Neil F W Saunders

Biochim Biophys Acta· September 2011

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Directionality in protein fold prediction.
Jonathan J Ellis, Fabien P E Huard, Charlotte M Deane, Sheenal Srivastava, Graham R Wood

BMC Bioinformatics· April 2010

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Evaluating conformational changes in protein structures binding RNA.
Jonathan J Ellis, Susan Jones

Proteins· March 2008

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Protein-RNA interactions: structural analysis and functional classes.
Jonathan J Ellis, Mark Broom, Susan Jones

Proteins· March 2007

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