Publications by authors named "Jonathan Jou"

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Novel Hybrid Approach to Portal Vein Thrombectomy Immediately Prior to Orthotopic Liver Transplantation.
Jonathan Jou, Brandon Pearson, Zachary Haber, Samer Ebaid

Case Rep Transplant· December 2025

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Low-velocity penetrating trauma with anterior mitral leaflet perforation and left ventricular injury: Immediate and postoperative management.
Sarah Kim, Jonathan Jou, Thomas Cartolano, Gregory Macaluso, Jane Kayle Lee

Trauma Case Rep· August 2025

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Efficacy and Safety of Perioperative Angiotensin II Versus Phenylephrine as a First-Line Continuous Infusion Vasopressor in Kidney Transplant Recipients.
Lyra P Beltran, Jamie Benken, Jonathan Jou, Enrico Benedetti, Hokuto Nishioka

Clin Transplant· August 2024

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PCSK6 and Survival in Idiopathic Pulmonary Fibrosis.
Justin M Oldham, Richard J Allen, Jose M Lorenzo-Salazar, Philip L Molyneaux, Shwu-Fan Ma, Jonathan Jou

Am J Respir Crit Care Med· June 2023

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Central lung gene expression associates with myofibroblast features in idiopathic pulmonary fibrosis.
Yong Huang, Rob Guzy, Shwu-Fan Ma, Catherine A Bonham, Jonathan Jou

BMJ Open Respir Res· February 2023

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Longitudinal lung function and gas transfer in individuals with idiopathic pulmonary fibrosis: a genome-wide association study.
Richard J Allen, Justin M Oldham, David A Jenkins, Olivia C Leavy, Beatriz Guillen-Guio, Jonathan Jou

Lancet Respir Med· January 2023

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Evaluation of a whole-exome sequencing pipeline and benchmarking of causal germline variant prioritizers.
Eva Tosco-Herrera, Adrián Muñoz-Barrera, David Jáspez, Luis A Rubio-Rodríguez, Alejandro Mendoza-Alvarez, Jonathan Jou

Hum Mutat· December 2022

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Combined hepatocellular carcinoma-cholangiocarcinoma in a patient with Fontan-associated liver disease.
Jonathan Jou, Jennifer Li, Fady M Kaldas

BMJ Case Rep· November 2022

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Genomic amplification of chromosome 20q13.33 is the early biomarker for the development of sporadic colorectal carcinoma.
Vo-Minh-Hoang Bui, Clément Mettling, Jonathan Jou, H Sunny Sun

BMC Med Genomics· October 2020

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TIAM2S Mediates Serotonin Homeostasis and Provokes a Pro-Inflammatory Immune Microenvironment Permissive for Colorectal Tumorigenesis.
Ya-Ling Chan, Wei-Chung Lai, Jia-Shing Chen, Joseph Ta-Chien Tseng, Pei-Chin Chuang, Jonathan Jou

Cancers (Basel)· July 2020

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Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface.
Anna U Lowegard, Marcel S Frenkel, Graham T Holt, Jonathan D Jou, Adegoke A Ojewole

PLoS Comput Biol· June 2020

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Minimization-Aware Recursive A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape.
Jonathan D Jou, Graham T Holt, Anna U Lowegard, Bruce R Donald

J Comput Biol· April 2020

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Sepsis-associated acute respiratory distress syndrome in individuals of European ancestry: a genome-wide association study.
Beatriz Guillen-Guio, Jose M Lorenzo-Salazar, Shwu-Fan Ma, Pei-Chi Hou, Tamara Hernandez-Beeftink, Jonathan Jou

Lancet Respir Med· March 2020

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Computational Analysis of Energy Landscapes Reveals Dynamic Features That Contribute to Binding of Inhibitors to CFTR-Associated Ligand.
Graham T Holt, Jonathan D Jou, Nicholas P Gill, Anna U Lowegard, Jeffrey W Martin

J Phys Chem B· December 2019

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Novel idiopathic pulmonary fibrosis susceptibility variants revealed by deep sequencing.
Jose M Lorenzo-Salazar, Shwu-Fan Ma, Jonathan Jou, Pei-Chi Hou, Beatriz Guillen-Guio

ERJ Open Res· April 2019

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TYRO3: A potential therapeutic target in cancer.
Pei-Ling Hsu, Jonathan Jou, Shaw-Jenq Tsai

Exp Biol Med (Maywood)· February 2019

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OSPREY 3.0: Open-source protein redesign for you, with powerful new features.
Mark A Hallen, Jeffrey W Martin, Adegoke Ojewole, Jonathan D Jou, Anna U Lowegard

J Comput Chem· November 2018

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BBK* (Branch and Bound Over K*): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces.
Adegoke A Ojewole, Jonathan D Jou, Vance G Fowler, Bruce R Donald

J Comput Biol· July 2018

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Focused Neuro-Otological Review of Superficial Siderosis of the Central Nervous System.
Aran Yoo, Jonathan Jou, Jeffrey D Klopfenstein, Jorge C Kattah

Front Neurol· May 2018

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LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid Rotamer-Like Efficiency.
Mark A Hallen, Jonathan D Jou, Bruce R Donald

J Comput Biol· June 2017

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A critical analysis of computational protein design with sparse residue interaction graphs.
Swati Jain, Jonathan D Jou, Ivelin S Georgiev, Bruce R Donald

PLoS Comput Biol· March 2017

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BWM*: A Novel, Provable, Ensemble-based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design.
Jonathan D Jou, Swati Jain, Ivelin S Georgiev, Bruce R Donald

J Comput Biol· June 2016

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Temporal and spatial expression of tight junction genes during zebrafish pronephros development.
Robert McKee, Gary F Gerlach, Jonathan Jou, Christina N Cheng, Rebecca A Wingert

Gene Expr Patterns· November 2014

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Production of haploid zebrafish embryos by in vitro fertilization.
Paul T Kroeger, Shahram Jevin Poureetezadi, Robert McKee, Jonathan Jou, Rachel Miceli

J Vis Exp· July 2014

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The epithelial sodium channel δ-subunit: new notes for an old song.
Teresa Giraldez, Patricio Rojas, Jonathan Jou, Carlos Flores, Diego Alvarez de la Rosa

Am J Physiol Renal Physiol· August 2012

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