Publications by authors named "Jonathon Baker"

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Comparative characterization reveals conserved and divergent ecological traits of oral corynebacteria.
Molly Burnside, Emily Helliwell, Puthayalai Treerat, Tanner Rozendal, Justin Merritt, Jonathon L Baker

Microbiol Spectr· December 2025

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Multi-omics profiling reveals atypical sugar utilization and a key membrane composition regulator in Streptococcus pneumoniae.
Vincent de Bakker, Xue Liu, Jonah Tang, Matthew Barbisan, Jonathon L Baker

Nat Commun· November 2025

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Shining Light on Oral Biofilm Fluorescence In Situ Hybridization (FISH): Probing the Accuracy of In Situ Biogeography Studies.
Molly Burnside, Jonah Tang, Jonathon L Baker, Justin Merritt, Jens Kreth

Mol Oral Microbiol· August 2025

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The salivary virome during childhood dental caries.
Jonah Tang, Jonathon L Baker

mSphere· August 2025

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The effect of on an oral microbiome of electronic cigarette users.
Daniela V Staton, Jonah Tang, Matthew Barbisan, Justin Nussbaum, Jonathon L Baker

J Oral Microbiol· May 2025

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A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of .
Yujiro Hirose, Daniel C Zielinski, Saugat Poudel, Kevin Rychel, Jonathon L Baker

mSystems· September 2024

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An efficient -inducible CRISPR interference system for group A genetic analysis and pathogenesis studies.
Elisabet Bjånes, Alexandra Stream, Axel B Janssen, Paddy S Gibson, Afonso M Bravo, Jonathon L Baker

mBio· August 2024

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Persistent enrichment of multidrug-resistant Klebsiella in oral and nasal communities during long-term starvation.
Jett Liu, Nell Spencer, Daniel R Utter, Alex S Grossman, Lei Lei, Jonathon L Baker

Microbiome· July 2024

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The salivary virome during childhood dental caries.
Jonah Tang, Jonathon L Baker

bioRxiv· May 2024

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The oral microbiome: diversity, biogeography and human health.
Jonathon L Baker, Jessica L Mark Welch, Kathryn M Kauffman, Jeffrey S McLean, Xuesong He

Nat Rev Microbiol· February 2024

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Persistent enrichment of multidrug resistant in oral and nasal communities during long-term starvation.
Jett Liu, Nell Spencer, Daniel R Utter, Alex Grossman, Nídia C D Santos, Jonathon L Baker

bioRxiv· December 2023

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Illuminating the oral microbiome and its host interactions: recent advancements in omics and bioinformatics technologies in the context of oral microbiome research.
Jonathon L Baker

FEMS Microbiol Rev· September 2023

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The Baker Lab at the OHSU School of Dentistry: leveraging bioinformatics and molecular biology to discover how the bacteria that live in our mouth impact human health and disease.
Jonathon L Baker

OHSU Sch Dent Anthol· January 2023

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Using Nanopore Sequencing to Obtain Complete Bacterial Genomes from Saliva Samples.
Jonathon L Baker

mSystems· October 2022

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Complete Genome Sequence of " Nanosynbacter" Strain HMT-348_TM7c-JB, a Member of Clade G1.
Jonathon L Baker

Microbiol Resour Announc· May 2022

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and Modulate Production of Mutanocyclin and Reutericyclins in Streptococcus mutans B04Sm5.
Jonathon L Baker, Xiaoyu Tang, Sandra LaBonte, Carla Uranga, Anna Edlund

J Bacteriol· May 2022

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Analysis of the Streptococcus mutans Proteome during Acid and Oxidative Stress Reveals Modules of Protein Coexpression and an Expanded Role for the TreR Transcriptional Regulator.
Elizabeth L Tinder, Roberta C Faustoferri, Andrew A Buckley, Robert G Quivey, Jonathon L Baker

mSystems· April 2022

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Identification of Oral Bacterial Biosynthetic Gene Clusters Associated with Caries.
Jonathon L Baker, Anna Edlund

Methods Mol Biol· January 2022

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Tetramic Acids Mutanocyclin and Reutericyclin A, Produced by Strain B04Sm5 Modulate the Ecology of an Oral Biofilm.
Carla Uranga, Karen E Nelson, Anna Edlund, Jonathon L Baker

Front Oral Health· January 2022

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Multi-Omics Study of Keystone Species in a Cystic Fibrosis Microbiome.
Cynthia B Silveira, Ana G Cobián-Güemes, Carla Uranga, Jonathon L Baker, Anna Edlund

Int J Mol Sci· November 2021

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Complete Genomes of Clade G6 Suggest a Divergent Ecological Niche and Lifestyle.
Jonathon L Baker

mSphere· August 2021

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Update in Chronic Obstructive Pulmonary Disease 2020.
Andy I Ritchie, Jonathon R Baker, Trisha M Parekh, James P Allinson, Surya P Bhatt

Am J Respir Crit Care Med· July 2021

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Complete Genome Sequence of Strain JB001, a Member of Clade G6 (" Nanogingivalaceae").
Jonathon L Baker

Microbiol Resour Announc· June 2021

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Computational approaches to point defect simulations for semiconductor solid solution alloys.
Kelsey J Mirrielees, Jonathon N Baker, Preston C Bowes, Douglas L Irving

J Chem Phys· March 2021

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Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules.
Jonathon L Baker, James T Morton, Márcia Dinis, Ruth Alvarez, Nini C Tran

Genome Res· January 2021

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