Publications by authors named "Joseph Gage"

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Investigating GERMs: How Genotype, Environment, and Rhizosphere Microbiome interactions underlie heat response in maize and sorghum.
Nate Korth, Isabella Borrero, Katelyn Rumley, Alex L Woodley, Mallory J Choudoir, Joseph L Gage

bioRxiv· December 2025

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Global genotype by environment prediction competition reveals that diverse modeling strategies can deliver satisfactory maize yield estimates.
Jacob D Washburn, José Ignacio Varela, Alencar Xavier, Qiuyue Chen, David Ertl, Joseph L Gage

Genetics· February 2025

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Maize inbreds show allelic variation for diel transcription patterns.
Joseph L Gage, M Cinta Romay, Edward S Buckler

bioRxiv· December 2024

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Global Genotype by Environment Prediction Competition Reveals That Diverse Modeling Strategies Can Deliver Satisfactory Maize Yield Estimates.
Jacob D Washburn, José Ignacio Varela, Alencar Xavier, Qiuyue Chen, David Ertl, Joseph L Gage

bioRxiv· September 2024

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2020-2021 field seasons of Maize GxE project within the Genomes to Fields Initiative.
Dayane Cristina Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Alden Perkins, Dylan L Schoemaker, Joseph L Gage

BMC Res Notes· September 2023

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Genomes to Fields 2022 Maize genotype by Environment Prediction Competition.
Dayane Cristina Lima, Jacob D Washburn, José Ignacio Varela, Qiuyue Chen, Joseph L Gage

BMC Res Notes· July 2023

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2018-2019 field seasons of the Maize Genomes to Fields (G2F) G x E project.
Dayane Cristina Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Bridget A McFarland, Shawn Kaeppler, Joseph L Gage

BMC Genom Data· May 2023

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Yield prediction through integration of genetic, environment, and management data through deep learning.
Daniel R Kick, Jason G Wallace, James C Schnable, Judith M Kolkman, Barış Alaca, Joseph L Gage

G3 (Bethesda)· April 2023

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Variation in upstream open reading frames contributes to allelic diversity in maize protein abundance.
Joseph L Gage, Sujina Mali, Fionn McLoughlin, Merritt Khaipho-Burch, Brandon Monier

Proc Natl Acad Sci U S A· April 2022

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Ten Years of the Maize Nested Association Mapping Population: Impact, Limitations, and Future Directions.
Joseph L Gage, Brandon Monier, Anju Giri, Edward S Buckler

Plant Cell· July 2020

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Maize genomes to fields (G2F): 2014-2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets.
Bridget A McFarland, Naser AlKhalifah, Martin Bohn, Jessica Bubert, Edward S Buckler, Joseph L Gage

BMC Res Notes· February 2020

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Multiple Maize Reference Genomes Impact the Identification of Variants by Genome-Wide Association Study in a Diverse Inbred Panel.
Joseph L Gage, Brieanne Vaillancourt, John P Hamilton, Norma C Manrique-Carpintero, Timothy J Gustafson

Plant Genome· June 2019

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Residual Heterozygosity and Epistatic Interactions Underlie the Complex Genetic Architecture of Yield in Diploid Potato.
Alexandre P Marand, Shelley H Jansky, Joseph L Gage, Andy J Hamernik, Natalia de Leon

Genetics· May 2019

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Genome-wide association analysis of stalk biomass and anatomical traits in maize.
Mona Mazaheri, Marlies Heckwolf, Brieanne Vaillancourt, Joseph L Gage, Brett Burdo

BMC Plant Biol· January 2019

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Selection Signatures Underlying Dramatic Male Inflorescence Transformation During Modern Hybrid Maize Breeding.
Joseph L Gage, Michael R White, Jode W Edwards, Shawn Kaeppler, Natalia de Leon

Genetics· November 2018

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Comparing Genome-Wide Association Study Results from Different Measurements of an Underlying Phenotype.
Joseph L Gage, Natalia de Leon, Murray K Clayton

G3 (Bethesda)· November 2018

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The effect of artificial selection on phenotypic plasticity in maize.
Joseph L Gage, Diego Jarquin, Cinta Romay, Aaron Lorenz, Edward S Buckler

Nat Commun· November 2017

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TIPS: a system for automated image-based phenotyping of maize tassels.
Joseph L Gage, Nathan D Miller, Edgar P Spalding, Shawn M Kaeppler, Natalia de Leon

Plant Methods· March 2017

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Erratum to: Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations.
Jennifer Spindel, Mark Wright, Charles Chen, Joshua Cobb, Joseph Gage

Theor Appl Genet· January 2016

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Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations.
Jennifer Spindel, Mark Wright, Charles Chen, Joshua Cobb, Joseph Gage

Theor Appl Genet· November 2013

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