Publications by authors named "Jules Nde"

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Integrative approaches for predicting protein network perturbations through machine learning and structural characterization.
Bethany D Bengs, Jules Nde, Sreejata Dutta, Yanming Li, Mihaela E Sardiu

J Proteomics· May 2025

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CaML: Chemistry-informed machine learning explains mutual changes between protein conformations and calcium ions in calcium-binding proteins using structural and topological features.
Pengzhi Zhang, Jules Nde, Yossi Eliaz, Nathaniel Jennings, Piotr Cieplak

Protein Sci· February 2025

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Chemistry-informed Machine Learning Explains Calcium-binding Proteins' Fuzzy Shape for Communicating Changes in the Atomic States of Calcium Ions.
Pengzhi Zhang, Jules Nde, Yossi Eliaz, Nathaniel Jennings, Piotr Cieplak

ArXiv· July 2024

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Experiment and Simulation Reveal Residue Details for How Target Binding Tunes Calmodulin's Calcium-Binding Properties.
Jules Nde, Pengzhi Zhang, M Neal Waxham, Margaret S Cheung

J Phys Chem B· April 2023

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Evolutionary Couplings and Molecular Dynamic Simulations Highlight Details of GPCRs Heterodimers' Interfaces.
Karim Widad Temgbet Nchourupouo, Jules Nde, Yannick Joel Wadop Ngouongo, Serge Sylvain Zekeng, Bernard Fongang

Molecules· February 2023

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Coarse-Grained Modeling and Molecular Dynamics Simulations of Ca-Calmodulin.
Jules Nde, Pengzhi Zhang, Jacob C Ezerski, Wei Lu, Kaitlin Knapp

Front Mol Biosci· August 2021

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qDSB-Seq is a general method for genome-wide quantification of DNA double-strand breaks using sequencing.
Yingjie Zhu, Anna Biernacka, Benjamin Pardo, Norbert Dojer, Romain Forey, Jules Nde

Nat Commun· May 2019

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i-BLESS is an ultra-sensitive method for detection of DNA double-strand breaks.
Anna Biernacka, Yingjie Zhu, Magdalena Skrzypczak, Romain Forey, Benjamin Pardo, Jules Nde

Commun Biol· October 2018

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Ssb1 and Ssb2 cooperate to regulate mouse hematopoietic stem and progenitor cells by resolving replicative stress.
Wei Shi, Therese Vu, Didier Boucher, Anna Biernacka, Jules Nde

Blood· May 2017

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