Publications by authors named "Norbert Dojer"

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AlfaPang: alignment free algorithm for pangenome graph construction.
Adam Cicherski, Anna Lisiecka, Norbert Dojer

Algorithms Mol Biol· May 2025

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Sequence Flow: interactive web application for visualizing partial order alignments.
Krzysztof Zdąbłasz, Anna Lisiecka, Norbert Dojer

BMC Genomics· October 2024

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Linearization of genome sequence graphs revisited.
Anna Lisiecka, Norbert Dojer

iScience· July 2021

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Getting insight into the pan-genome structure with PangTree.
Paulina Dziadkiewicz, Norbert Dojer

BMC Genomics· April 2020

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qDSB-Seq is a general method for genome-wide quantification of DNA double-strand breaks using sequencing.
Yingjie Zhu, Anna Biernacka, Benjamin Pardo, Norbert Dojer, Romain Forey

Nat Commun· May 2019

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Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures.
Thomas Clouaire, Vincent Rocher, Anahita Lashgari, Coline Arnould, Marion Aguirrebengoa, Norbert Dojer

Mol Cell· October 2018

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Defective XRN3-mediated transcription termination in Arabidopsis affects the expression of protein-coding genes.
Michal Krzyszton, Monika Zakrzewska-Placzek, Aleksandra Kwasnik, Norbert Dojer, Wojciech Karlowski

Plant J· March 2018

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Ssb1 and Ssb2 cooperate to regulate mouse hematopoietic stem and progenitor cells by resolving replicative stress.
Wei Shi, Therese Vu, Didier Boucher, Anna Biernacka, Jules Nde, Norbert Dojer

Blood· May 2017

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RECORD: Reference-Assisted Genome Assembly for Closely Related Genomes.
Krisztian Buza, Bartek Wilczynski, Norbert Dojer

Int J Genomics· November 2015

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Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data.
Michal Dabrowski, Norbert Dojer, Izabella Krystkowiak, Bozena Kaminska, Bartek Wilczynski

BMC Bioinformatics· May 2015

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MSARC: Multiple sequence alignment by residue clustering.
Michał Modzelewski, Norbert Dojer

Algorithms Mol Biol· August 2014

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A probabilistic approach to learn chromatin architecture and accurate inference of the NF-κB/RelA regulatory network using ChIP-Seq.
Jun Yang, Abhishek Mitra, Norbert Dojer, Shuhua Fu, Maga Rowicka

Nucleic Acids Res· August 2013

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BNFinder2: Faster Bayesian network learning and Bayesian classification.
Norbert Dojer, Pawel Bednarz, Agnieszka Podsiadlo, Bartek Wilczynski

Bioinformatics· August 2013

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Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing.
Nicola Crosetto, Abhishek Mitra, Maria Joao Silva, Magda Bienko, Norbert Dojer

Nat Methods· April 2013

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Bi-billboard: symmetrization and careful choice of informant species results in higher accuracy of regulatory element prediction.
Norbert Dojer, Przemyslaw Biecek, Jerzy Tiuryn

J Comput Biol· June 2011

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Comparative analysis of cis-regulation following stroke and seizures in subspaces of conserved eigensystems.
Michal Dabrowski, Norbert Dojer, Malgorzata Zawadzka, Jakub Mieczkowski, Bozena Kaminska

BMC Syst Biol· June 2010

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Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs.
Bartek Wilczynski, Norbert Dojer, Mateusz Patelak, Jerzy Tiuryn

BMC Bioinformatics· March 2009

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BNFinder: exact and efficient method for learning Bayesian networks.
Bartek Wilczyński, Norbert Dojer

Bioinformatics· January 2009

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Applying dynamic Bayesian networks to perturbed gene expression data.
Norbert Dojer, Anna Gambin, Andrzej Mizera, Bartek Wilczyński, Jerzy Tiuryn

BMC Bioinformatics· May 2006

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