Publications by authors named "Maga Rowicka"

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Coevolution combined with molecular dynamics simulations provides structural and mechanistic insights into the interactions between the integrator complex subunits.
Bernard Fongang, Yannick N Wadop, Yingjie Zhu, Eric J Wagner, Andrzej Kudlicki, Maga Rowicka

Comput Struct Biotechnol J· November 2023

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High-resolution, ultrasensitive and quantitative DNA double-strand break labeling in eukaryotic cells using i-BLESS.
Anna Biernacka, Magdalena Skrzypczak, Yingjie Zhu, Philippe Pasero, Maga Rowicka

Nat Protoc· February 2021

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A Role for the Mre11-Rad50-Xrs2 Complex in Gene Expression and Chromosome Organization.
Romain Forey, Antoine Barthe, Mireille Tittel-Elmer, Maxime Wery, Marie-Bénédicte Barrault, Maga Rowicka

Mol Cell· January 2021

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Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites.
Alexy Promonet, Ismaël Padioleau, Yaqun Liu, Lionel Sanz, Anna Biernacka, Maga Rowicka

Nat Commun· August 2020

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Stochasticity of replication forks' speeds plays a key role in the dynamics of DNA replication.
Razie Yousefi, Maga Rowicka

PLoS Comput Biol· December 2019

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Coevolution of Residues Provides Evidence of a Functional Heterodimer of 5-HTR and 5-HTR Involving Both Intracellular and Extracellular Domains.
Bernard Fongang, Kathryn A Cunningham, Maga Rowicka, Andrzej Kudlicki

Neuroscience· August 2019

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qDSB-Seq is a general method for genome-wide quantification of DNA double-strand breaks using sequencing.
Yingjie Zhu, Anna Biernacka, Benjamin Pardo, Norbert Dojer, Romain Forey, Maga Rowicka

Nat Commun· May 2019

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Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures.
Thomas Clouaire, Vincent Rocher, Anahita Lashgari, Coline Arnould, Marion Aguirrebengoa, Maga Rowicka

Mol Cell· October 2018

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i-BLESS is an ultra-sensitive method for detection of DNA double-strand breaks.
Anna Biernacka, Yingjie Zhu, Magdalena Skrzypczak, Romain Forey, Benjamin Pardo, Maga Rowicka

Commun Biol· October 2018

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Predicting proteome dynamics using gene expression data.
Krzysztof Kuchta, Joanna Towpik, Anna Biernacka, Jan Kutner, Andrzej Kudlicki, Maga Rowicka

Sci Rep· September 2018

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Ssb1 and Ssb2 cooperate to regulate mouse hematopoietic stem and progenitor cells by resolving replicative stress.
Wei Shi, Therese Vu, Didier Boucher, Anna Biernacka, Jules Nde, Maga Rowicka

Blood· May 2017

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Genome-wide mapping of long-range contacts unveils clustering of DNA double-strand breaks at damaged active genes.
François Aymard, Marion Aguirrebengoa, Emmanuelle Guillou, Biola M Javierre, Beatrix Bugler, Maga Rowicka

Nat Struct Mol Biol· April 2017

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Strategies for achieving high sequencing accuracy for low diversity samples and avoiding sample bleeding using illumina platform.
Abhishek Mitra, Magdalena Skrzypczak, Krzysztof Ginalski, Maga Rowicka

PLoS One· April 2016

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Modulation of gene expression regulated by the transcription factor NF-κB/RelA.
Xueling Li, Yingxin Zhao, Bing Tian, Mohammad Jamaluddin, Abhishek Mitra, Maga Rowicka

J Biol Chem· April 2014

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Probabilistic approach to predicting substrate specificity of methyltransferases.
Teresa Szczepińska, Jan Kutner, Michał Kopczyński, Krzysztof Pawłowski, Andrzej Dziembowski, Maga Rowicka

PLoS Comput Biol· March 2014

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A probabilistic approach to learn chromatin architecture and accurate inference of the NF-κB/RelA regulatory network using ChIP-Seq.
Jun Yang, Abhishek Mitra, Norbert Dojer, Shuhua Fu, Maga Rowicka

Nucleic Acids Res· August 2013

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Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing.
Nicola Crosetto, Abhishek Mitra, Maria Joao Silva, Magda Bienko, Norbert Dojer, Maga Rowicka

Nat Methods· April 2013

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Comprehensive structural and substrate specificity classification of the Saccharomyces cerevisiae methyltransferome.
Tomasz Wlodarski, Jan Kutner, Joanna Towpik, Lukasz Knizewski, Leszek Rychlewski, Maga Rowicka

PLoS One· February 2012

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Comparison of pattern detection methods in microarray time series of the segmentation clock.
Mary-Lee Dequéant, Sebastian Ahnert, Herbert Edelsbrunner, Thomas M A Fink, Earl F Glynn, Maga Rowicka

PLoS One· August 2008

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The crystallographic fast Fourier transform. Recursive symmetry reduction.
Andrzej Kudlicki, Maga Rowicka, Zbyszek Otwinowski

Acta Crystallogr A· November 2007

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High-resolution timing of cell cycle-regulated gene expression.
Maga Rowicka, Andrzej Kudlicki, Benjamin P Tu, Zbyszek Otwinowski

Proc Natl Acad Sci U S A· October 2007

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SCEPTRANS: an online tool for analyzing periodic transcription in yeast.
Andrzej Kudlicki, Maga Rowicka, Zbyszek Otwinowski

Bioinformatics· June 2007

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Valosin-containing protein (p97) is a regulator of endoplasmic reticulum stress and of the degradation of N-end rule and ubiquitin-fusion degradation pathway substrates in mammalian cells.
Cezary Wójcik, Maga Rowicka, Andrzej Kudlicki, Dominika Nowis, Elizabeth McConnell

Mol Biol Cell· November 2006

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Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes.
Benjamin P Tu, Andrzej Kudlicki, Maga Rowicka, Steven L McKnight

Science· November 2005

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The crystallographic fast Fourier transform. IV. FFT-asymmetric units in the reciprocal space.
Andrzej Kudlicki, Maga Rowicka, Zbyszek Otwinowski

Acta Crystallogr A· March 2004

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