Publications by authors named "Jun Allard"

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Scalable inference and identifiability of kinetic parameters for transcriptional bursting from single cell data.
Junhao Gu, Nandor Laszik, Christopher E Miles, Jun Allard, Timothy L Downing

Bioinformatics· November 2025

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Impact of N-terminal dimerization on formin homology 1 domain polymer dynamics and actin assembly.
Katharine Bogue, Bryan Christian, Margot Quinlan, Jun Allard

bioRxiv· November 2025

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Nucleosome placement and polymer mechanics explain genomic contacts on 100 kb scales.
John Corrette, Jiachun Li, Hanjuan Shao, Praveen Krishna Veerasubramanian, Andrew Spakowitz, Jun Allard

Nucleic Acids Res· July 2025

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Astral architecture can enhance mechanical strength of cytoskeletal networks by modulating percolation thresholds.
Brady Berg, Jun Allard

bioRxiv· June 2025

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Nucleosome placement and polymer mechanics explain genomic contacts on 100kbp scales.
John Corrette, Jiachun Li, Hanjuan Shao, Praveen Krishna Veerasubramanian, Andrew Spakowitz, Jun Allard

bioRxiv· May 2025

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A new method to experimentally quantify dynamics of initial protein-protein interactions.
Babu Reddy Janakaloti Narayanareddy, Nathan Reddy Allipeta, Jun Allard, Steven P Gross

Commun Biol· March 2024

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Cost-efficient boundary-free surface patterning achieves high effective-throughput of time-lapse microscopy experiments.
Guohao Liang, Hong Yin, Jun Allard, Fangyuan Ding

PLoS One· October 2022

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Simulation of receptor triggering by kinetic segregation shows role of oligomers and close contacts.
Robert Taylor, Jun Allard, Elizabeth L Read

Biophys J· May 2022

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Zebrafish airinemes optimize their shape between ballistic and diffusive search.
Sohyeon Park, Hyunjoong Kim, Yi Wang, Dae Seok Eom, Jun Allard

Elife· April 2022

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Dephosphorylation accelerates the dissociation of ZAP70 from the T cell receptor.
Jesse Goyette, David Depoil, Zhengmin Yang, Samuel A Isaacson, Jun Allard

Proc Natl Acad Sci U S A· March 2022

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Determination of the molecular reach of the protein tyrosine phosphatase SHP-1.
Lara Clemens, Mikhail Kutuzov, Kristina Viktoria Bayer, Jesse Goyette, Jun Allard

Biophys J· May 2021

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Diffusion of kinesin motors on cargo can enhance binding and run lengths during intracellular transport.
Matthew Bovyn, Babu Reddy Janakaloti Narayanareddy, Steven Gross, Jun Allard

Mol Biol Cell· April 2021

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Intrinsic Disorder in the T Cell Receptor Creates Cooperativity and Controls ZAP70 Binding.
Lara Clemens, Omer Dushek, Jun Allard

Biophys J· January 2021

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Molecular flexibility of DNA as a key determinant of RAD51 recruitment.
Federico Paoletti, Afaf H El-Sagheer, Jun Allard, Tom Brown, Omer Dushek

EMBO J· April 2020

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The Influence of Molecular Reach and Diffusivity on the Efficacy of Membrane-Confined Reactions.
Ying Zhang, Lara Clemens, Jesse Goyette, Jun Allard, Omer Dushek

Biophys J· October 2019

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Bidirectional sliding of two parallel microtubules generated by multiple identical motors.
Jun Allard, Marie Doumic, Alex Mogilner, Dietmar Oelz

J Math Biol· July 2019

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Efficient simulation of thermally fluctuating biopolymers immersed in fluids on 1-micron, 1-second scales.
Kai Liu, John Lowengrub, Jun Allard

J Comput Phys· June 2019

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Hydrodynamics of transient cell-cell contact: The role of membrane permeability and active protrusion length.
Kai Liu, Brian Chu, Jay Newby, Elizabeth L Read, John Lowengrub, Jun Allard

PLoS Comput Biol· April 2019

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Extracting multivalent detachment rates from heterogeneous nanoparticle populations.
Mingqiu Wang, Jun Allard, Jered B Haun

Phys Chem Chem Phys· August 2018

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Cargo navigation across 3D microtubule intersections.
Jared P Bergman, Matthew J Bovyn, Florence F Doval, Abhimanyu Sharma, Manasa V Gudheti, Jun F Allard

Proc Natl Acad Sci U S A· January 2018

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Actin Turnover in Lamellipodial Fragments.
Dikla Raz-Ben Aroush, Noa Ofer, Enas Abu-Shah, Jun Allard, Oleg Krichevsky

Curr Biol· October 2017

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Dynamics of a multicomponent vesicle in shear flow.
Kai Liu, Gary R Marple, Jun Allard, Shuwang Li, Shravan Veerapaneni

Soft Matter· May 2017

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Biophysical assay for tethered signaling reactions reveals tether-controlled activity for the phosphatase SHP-1.
Jesse Goyette, Citlali Solis Salas, Nicola Coker-Gordon, Marcus Bridge, Samuel A Isaacson, Jun Allard

Sci Adv· March 2017

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Computational simulation of formin-mediated actin polymerization predicts homologue-dependent mechanosensitivity.
Derek Bryant, Lara Clemens, Jun Allard

Cytoskeleton (Hoboken)· January 2017

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Adhesion-Dependent Wave Generation in Crawling Cells.
Erin L Barnhart, Jun Allard, Sunny S Lou, Julie A Theriot, Alex Mogilner

Curr Biol· January 2017

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