Publications by authors named "Justin Kinney"

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GaugeFixer: overcoming parameter non-identifiability in models of sequence-function relationships.
Carlos Martí-Gómez, David M McCandlish, Justin B Kinney

bioRxiv· December 2025

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Structural basis of DNA-dependent coactivator recruitment by the tuft cell master regulator POU2F3.
Aktan Alpsoy, Jonathan J Ipsaro, Damianos Skopelitis, Sujay Pal, Frank S Chung, Justin B Kinney

Cell Rep· November 2025

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Uncovering the Mechanistic Landscape of Regulatory DNA with Deep Learning.
Evan E Seitz, David M McCandlish, Justin B Kinney, Peter K Koo

bioRxiv· October 2025

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Inference and visualization of complex genotype-phenotype maps with .
Carlos Martí-Gómez, Juannan Zhou, Wei-Chia Chen, Arlin Stoltzfus, Justin B Kinney

bioRxiv· August 2025

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On learning functions over biological sequence space: relating Gaussian process priors, regularization, and gauge fixing.
Samantha Petti, Carlos Martí-Gómez, Justin B Kinney, Juannan Zhou, David M McCandlish

ArXiv· August 2025

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On learning functions over biological sequence space: relating Gaussian process priors, regularization, and gauge fixing.
Samantha Petti, Carlos Martí-Gómez, Justin B Kinney, Juannan Zhou, David M McCandlish

bioRxiv· August 2025

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A method for fabricating CMOS back-end-of-line-compatible solid-state nanopore devices.
Mohamed Yassine Bouhamidi, Chunhui Dai, Michel Stephan, Joyeeta Nag, Justin Kinney

Nanotechnology· July 2025

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Gauge fixing for sequence-function relationships.
Anna Posfai, Juannan Zhou, David M McCandlish, Justin B Kinney

PLoS Comput Biol· May 2025

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HENMT1 restricts endogenous retrovirus activity by methylation of 3'-tRNA fragments.
Josh I Steinberg, Helene Sertznig, John J Desmarais, Jenna Wilken, Daisy Rubio, Justin B Kinney

bioRxiv· May 2025

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Symmetry, gauge freedoms, and the interpretability of sequence-function relationships.
Anna Posfai, David M McCandlish, Justin B Kinney

Phys Rev Res· April 2025

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Symmetry, gauge freedoms, and the interpretability of sequence-function relationships.
Anna Posfai, David M McCandlish, Justin B Kinney

bioRxiv· March 2025

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Algebraic and diagrammatic methods for the rule-based modeling of multi-particle complexes.
Rebecca J Rousseau, Justin B Kinney

ArXiv· September 2024

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Multicenter Retrospective Review of Ketamine Use in Pediatric Intensive Care Units (Ketamine-PICU Study).
Christine M Groth, Christopher A Droege, Preeyaporn Sarangarm, Michaelia D Cucci, Kyle A Gustafson, Justin Kinney

Crit Care Res Pract· July 2024

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Gauge fixing for sequence-function relationships.
Anna Posfai, Juannan Zhou, David M McCandlish, Justin B Kinney

bioRxiv· June 2024

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Interpreting -regulatory mechanisms from genomic deep neural networks using surrogate models.
Evan E Seitz, David M McCandlish, Justin B Kinney, Peter K Koo

Nat Mach Intell· June 2024

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Interpreting -regulatory mechanisms from genomic deep neural networks using surrogate models.
Evan E Seitz, David M McCandlish, Justin B Kinney, Peter K Koo

bioRxiv· March 2024

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Specificity, synergy, and mechanisms of splice-modifying drugs.
Yuma Ishigami, Mandy S Wong, Carlos Martí-Gómez, Andalus Ayaz, Mahdi Kooshkbaghi, Justin B Kinney

Nat Commun· February 2024

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Advancing Pharmacy Education by Moving From Sequenced "Integration" to True Curricular Integration.
Dianqing Sun, Justin Kinney, Alexandra Hintz, Melissa Beck, Aleda M H Chen

Am J Pharm Educ· June 2023

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Mentorship Landscape and Common Practices in an Academic Pharmacy Association.
Shannon Kinney, Kristin M Janzen, Kelly M Shields, Jaclyn Tetenbaum-Novatt, Manas Mandal, Justin Kinney

Am J Pharm Educ· May 2023

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Higher-order epistasis and phenotypic prediction.
Juannan Zhou, Mandy S Wong, Wei-Chia Chen, Adrian R Krainer, Justin B Kinney

Proc Natl Acad Sci U S A· September 2022

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Structural and mechanistic basis of σ-dependent transcriptional pausing.
Chirangini Pukhrambam, Vadim Molodtsov, Mahdi Kooshkbaghi, Ammar Tareen, Hoa Vu, Justin B Kinney

Proc Natl Acad Sci U S A· June 2022

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MAVE-NN: learning genotype-phenotype maps from multiplex assays of variant effect.
Ammar Tareen, Mahdi Kooshkbaghi, Anna Posfai, William T Ireland, David M McCandlish, Justin B Kinney

Genome Biol· April 2022

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Revisiting the Socratic method of teaching to improve third-year pharmacy students critical thinking and advanced pharmacy practice experience readiness in a critical care elective.
Justin Kinney

Curr Pharm Teach Learn· April 2022

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Multicenter Retrospective Review of Ketamine Use in the ICU.
Christine M Groth, Christopher A Droege, Kathryn A Connor, Kimberly Kaukeinen, Nicole M Acquisto, Justin Kinney

Crit Care Explor· February 2022

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Diabetic Ketoacidosis Updates: Titratable Insulin Infusions and Long-Acting Insulin Early.
Justin Kinney, Oshin Baroi, Mania Gharibian

Crit Care Res Pract· December 2021

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