Publications by authors named "Kai-Lin Hong"

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Clonally expanded IgG, but not IgA, antibody-secreting cells preferentially target influenza nucleoprotein following homologous and heterologous infections.
Andreas Agrafiotis, Raphael Kuhn, Camilla Panetti, Marco Venerito, Hathaichanok Phandee, Kai-Lin Hong

J Immunol· October 2025

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ePlatypus: an ecosystem for computational analysis of immunogenomics data.
Tudor-Stefan Cotet, Andreas Agrafiotis, Victor Kreiner, Raphael Kuhn, Danielle Shlesinger, Kai-Lin Hong

Bioinformatics· September 2023

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Persistent virus-specific and clonally expanded antibody-secreting cells respond to induced self-antigen in the CNS.
Andreas Agrafiotis, Raphael Dizerens, Ilena Vincenti, Ingrid Wagner, Raphael Kuhn, Kai-Lin Hong

Acta Neuropathol· March 2023

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Generation of a single-cell B cell atlas of antibody repertoires and transcriptomes to identify signatures associated with antigen specificity.
Andreas Agrafiotis, Daniel Neumeier, Kai-Lin Hong, Tasnia Chowdhury, Roy Ehling

iScience· March 2023

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High-throughput T cell receptor engineering by functional screening identifies candidates with enhanced potency and specificity.
Rodrigo Vazquez-Lombardi, Johanna S Jung, Fabrice S Schlatter, Anna Mei, Natalia Rodrigues Mantuano, Kai-Lin Hong

Immunity· October 2022

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Single-cell immune repertoire sequencing of B and T cells in murine models of infection and autoimmunity.
Danielle Shlesinger, Kai-Lin Hong, Ghazal Shammas, Nicolas Page, Ioana Sandu

Genes Immun· September 2022

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Echidna: integrated simulations of single-cell immune receptor repertoires and transcriptomes.
Jiami Han, Solène Masserey, Danielle Shlesinger, Raphael Kuhn, Chrysa Papadopoulou, Kai-Lin Hong

Bioinform Adv· September 2022

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DeepSARS: simultaneous diagnostic detection and genomic surveillance of SARS-CoV-2.
Alexander Yermanos, Kai-Lin Hong, Andreas Agrafiotis, Jiami Han, Sarah Nadeau

BMC Genomics· April 2022

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Clonally Expanded Virus-Specific CD8 T Cells Acquire Diverse Transcriptional Phenotypes During Acute, Chronic, and Latent Infections.
Raphael Kuhn, Ioana Sandu, Andreas Agrafiotis, Kai-Lin Hong, Danielle Shlesinger

Front Immunol· March 2022

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Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single-cell analysis.
Daniel Neumeier, Alessandro Pedrioli, Alessandro Genovese, Ioana Sandu, Roy Ehling, Kai-Lin Hong

Eur J Immunol· February 2022

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SARS-CoV-2 reactive and neutralizing antibodies discovered by single-cell sequencing of plasma cells and mammalian display.
Roy A Ehling, Cédric R Weber, Derek M Mason, Simon Friedensohn, Bastian Wagner, Kai-Lin Hong

Cell Rep· January 2022

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Enhancing the efficiency of the Pichia pastoris AOX1 promoter via the synthetic positive feedback circuit of transcription factor Mxr1.
Ching-Hsiang Chang, Hao-An Hsiung, Kai-Lin Hong, Ching-Tsan Huang

BMC Biotechnol· December 2018

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Biofabricating Functional Soft Matter Using Protein Engineering to Enable Enzymatic Assembly.
Yi Liu, Hsuan-Chen Wu, Narendranath Bhokisham, Jinyang Li, Kai-Lin Hong

Bioconjug Chem· June 2018

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