Publications by authors named "Kami Chiotti"

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Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles.
Bhavneet Bhinder, Verena Friedl, Sunantha Sethuraman, Davide Risso, Kami E Chiotti

Sci Rep· July 2025

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Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction.
Adriana Salcedo, Maxime Tarabichi, Alex Buchanan, Shadrielle M G Espiritu, Hongjiu Zhang, Kami Chiotti

Nat Biotechnol· April 2025

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Mutation of SIVA, a candidate metastasis gene identified from clonally related bilateral breast cancers, promotes breast cancer cell spread in vitro and in vivo.
Anke Vermehren-Schmaedick, Myron Peto, Wendy Wagoner, Kami E Chiotti, Elizabeth Ramsey

PLoS One· May 2024

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HER2 heterogeneity and treatment response-associated profiles in HER2-positive breast cancer in the NCT02326974 clinical trial.
Zheqi Li, Otto Metzger Filho, Giuseppe Viale, Patrizia dell'Orto, Leila Russo, Kami Chiotti

J Clin Invest· February 2024

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INHBA is a mediator of aggressive tumor behavior in HER2+ basal breast cancer.
Moqing Liu, Rebecca Smith, Tiera Liby, Kami Chiotti, Claudia S López

Breast Cancer Res· March 2022

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A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.
Allison Creason, David Haan, Kristen Dang, Kami E Chiotti, Matthew Inkman

Cell Syst· August 2021

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Enzalutamide response in a panel of prostate cancer cell lines reveals a role for glucocorticoid receptor in enzalutamide resistant disease.
Rebecca Smith, Moqing Liu, Tiera Liby, Nora Bayani, Elmar Bucher, Kami Chiotti

Sci Rep· December 2020

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BET bromodomain inhibition blocks the function of a critical AR-independent master regulator network in lethal prostate cancer.
Daniel J Coleman, Lina Gao, Carly J King, Jacob Schwartzman, Joshua Urrutia, Kami E Chiotti

Oncogene· July 2019

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Maintenance of MYC expression promotes de novo resistance to BET bromodomain inhibition in castration-resistant prostate cancer.
Daniel J Coleman, Lina Gao, Jacob Schwartzman, James E Korkola, David Sampson, Kami E Chiotti

Sci Rep· March 2019

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MHC class I loaded ligands from breast cancer cell lines: A potential HLA-I-typed antigen collection.
Dmitri V Rozanov, Nikita D Rozanov, Kami E Chiotti, Ashok Reddy, Phillip A Wilmarth

J Proteomics· March 2018

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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines.
Kyle Ellrott, Matthew H Bailey, Gordon Saksena, Kyle R Covington, Cyriac Kandoth, Kami E Chiotti

Cell Syst· March 2018

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Physiologically activated mammary fibroblasts promote postpartum mammary cancer.
Qiuchen Guo, Jessica Minnier, Julja Burchard, Kami Chiotti, Paul Spellman

JCI Insight· March 2017

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Identification of shared TCR sequences from T cells in human breast cancer using emulsion RT-PCR.
Daniel J Munson, Colt A Egelston, Kami E Chiotti, Zuly E Parra, Tullia C Bruno

Proc Natl Acad Sci U S A· July 2016

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The Valley-of-Death: reciprocal sign epistasis constrains adaptive trajectories in a constant, nutrient limiting environment.
Kami E Chiotti, Daniel J Kvitek, Karen H Schmidt, Gregory Koniges, Katja Schwartz

Genomics· December 2014

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Transcription restores DNA repair to heterochromatin, determining regional mutation rates in cancer genomes.
Christina L Zheng, Nicholas J Wang, Jongsuk Chung, Homayoun Moslehi, J Zachary Sanborn, Kami E Chiotti

Cell Rep· November 2014

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Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve.
Jeff S Piotrowski, Saisubramanian Nagarajan, Evgueny Kroll, Alison Stanbery, Kami E Chiotti

BMC Evol Biol· April 2012

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Genotypic and phenotypic variation in Pseudomonas aeruginosa reveals signatures of secondary infection and mutator activity in certain cystic fibrosis patients with chronic lung infections.
Ashley E Warren, Carla M Boulianne-Larsen, Christine B Chandler, Kami Chiotti, Evgueny Kroll

Infect Immun· December 2011

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Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency.
Jared W Wenger, Jeffrey Piotrowski, Saisubramanian Nagarajan, Kami Chiotti, Gavin Sherlock

PLoS Genet· August 2011

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