Publications by authors named "Karim Beguir"

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Annotating the genome at single-nucleotide resolution with DNA foundation models.
Bernardo P de Almeida, Hugo Dalla-Torre, Guillaume Richard, Christopher Blum, Lorenz Hexemer, Karim Beguir

Nat Methods· November 2025

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Assessing data size requirements for training generalizable sequence-based TCR specificity models via pan-allelic MHC-I point-mutation ligandome evaluation.
Antoine Delaunay, Miles McGibbon, Bachir Djermani, Nikolai Gorbushin, Sergio Chaves García-Mascaraque, Karim Beguir

Sci Rep· November 2025

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Nucleotide Transformer: building and evaluating robust foundation models for human genomics.
Hugo Dalla-Torre, Liam Gonzalez, Javier Mendoza-Revilla, Nicolas Lopez Carranza, Adam Henryk Grzywaczewski, Karim Beguir

Nat Methods· February 2025

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A foundational large language model for edible plant genomes.
Javier Mendoza-Revilla, Evan Trop, Liam Gonzalez, Maša Roller, Hugo Dalla-Torre, Karim Beguir

Commun Biol· July 2024

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Progressive loss of conserved spike protein neutralizing antibody sites in Omicron sublineages is balanced by preserved T cell immunity.
Alexander Muik, Bonny Gaby Lui, Jasmin Quandt, Huitian Diao, Yunguan Fu, Karim Beguir

Cell Rep· August 2023

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Early computational detection of potential high-risk SARS-CoV-2 variants.
Karim Beguir, Marcin J Skwark, Yunguan Fu, Thomas Pierrot, Nicolas Lopez Carranza

Comput Biol Med· March 2023

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Can hackathons unlock a new talent pool from the developing world?
Timothy P Jenkins, Nicolas Lopez Carranza, Amy Bray, Karim Beguir, Andreas H Laustsen

Nat Biotechnol· August 2022

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