Publications by authors named "Thomas Pierrot"

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Annotating the genome at single-nucleotide resolution with DNA foundation models.
Bernardo P de Almeida, Hugo Dalla-Torre, Guillaume Richard, Christopher Blum, Lorenz Hexemer, Thomas Pierrot

Nat Methods· November 2025

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Nucleotide Transformer: building and evaluating robust foundation models for human genomics.
Hugo Dalla-Torre, Liam Gonzalez, Javier Mendoza-Revilla, Nicolas Lopez Carranza, Adam Henryk Grzywaczewski, Thomas Pierrot

Nat Methods· February 2025

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Are genomic language models all you need? Exploring genomic language models on protein downstream tasks.
Sam Boshar, Evan Trop, Bernardo P de Almeida, Liviu Copoiu, Thomas Pierrot

Bioinformatics· September 2024

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A foundational large language model for edible plant genomes.
Javier Mendoza-Revilla, Evan Trop, Liam Gonzalez, Maša Roller, Hugo Dalla-Torre, Thomas Pierrot

Commun Biol· July 2024

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Early computational detection of potential high-risk SARS-CoV-2 variants.
Karim Beguir, Marcin J Skwark, Yunguan Fu, Thomas Pierrot, Nicolas Lopez Carranza

Comput Biol Med· March 2023

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