Publications by authors named "Kenneth A Marx"

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Molecular properties and intramolecular interactions of peptide-conjugated phosphorodiamidate morpholino oligonucleotides.
Evgenii Kliuchnikov, Farkhad Maksudov, Daniel Pierson, Kenneth A Marx, Arani Chanda

Mol Ther Nucleic Acids· September 2025

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Strength, deformability, damage and fracture toughness of fibrous material networks: Application to fibrin clots.
Evgenii Kliuchnikov, Angelos Gkarsen Dagklis, Rustem I Litvinov, Kenneth A Marx, John W Weisel

Acta Biomater· July 2025

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Structural Mechanisms of Forced Unfolding of Double-Stranded Fibrin Oligomers.
Farkhad Maksudov, Anna D Protopopova, Rustem I Litvinov, Kenneth A Marx, John W Weisel

J Phys Chem B· April 2025

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Improving the potency prediction for chemically modified siRNAs through insights from molecular modeling of individual sequence positions.
Evgenii Kliuchnikov, Farkhad Maksudov, Jeffrey Zuber, Sarah Hyde, Adam Castoreno, Kenneth A Marx

Mol Ther Nucleic Acids· March 2025

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Optimal strategies for correcting merotelic chromosome attachments in anaphase.
Evgenii Kliuchnikov, Kenneth A Marx, Valeri Barsegov, Alex Mogilner

Proc Natl Acad Sci U S A· February 2025

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Exploring effects of platelet contractility on the kinetics, thermodynamics, and mechanisms of fibrin clot contraction.
Evgenii Kliuchnikov, Alina D Peshkova, Minh Quan Vo, Kenneth A Marx, Rustem I Litvinov

NPJ Biol Phys Mech· February 2025

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Charge transport in individual short base stacked single-stranded RNA molecules.
Subrata Chandra, Ajoke Williams, Farkhad Maksudov, Evgenii Kliuchnikov, Keshani G G Pattiya Arachchillage, Kenneth A Marx

Sci Rep· November 2023

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Mechanical fatigue testing in silico: Dynamic evolution of material properties of nanoscale biological particles.
Farkhad Maksudov, Evgenii Kliuchnikov, Kenneth A Marx, Prashant K Purohit, Valeri Barsegov

Acta Biomater· August 2023

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Interrelated effects of chromosome size, mechanics, number, location-orientation and polar ejection force on the spindle accuracy: a 3D computational study.
Evgenii Kliuchnikov, Kenneth A Marx, Alexander Mogilner, Valeri Barsegov

Mol Biol Cell· May 2023

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Therapeutic phosphorodiamidate morpholino oligonucleotides: Physical properties, solution structures, and folding thermodynamics.
Farkhad Maksudov, Evgenii Kliuchnikov, Daniel Pierson, M L Ujwal, Kenneth A Marx

Mol Ther Nucleic Acids· March 2023

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CellDynaMo-stochastic reaction-diffusion-dynamics model: Application to search-and-capture process of mitotic spindle assembly.
Evgenii Kliuchnikov, Artem Zhmurov, Kenneth A Marx, Alex Mogilner, Valeri Barsegov

PLoS Comput Biol· June 2022

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Microtubule assembly and disassembly dynamics model: Exploring dynamic instability and identifying features of Microtubules' Growth, Catastrophe, Shortening, and Rescue.
Evgenii Kliuchnikov, Eugene Klyshko, Maria S Kelly, Artem Zhmurov, Ruxandra I Dima, Kenneth A Marx

Comput Struct Biotechnol J· January 2022

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Strength, deformability and toughness of uncrosslinked fibrin fibers from theoretical reconstruction of stress-strain curves.
Farkhad Maksudov, Ali Daraei, Anuj Sesha, Kenneth A Marx, Martin Guthold

Acta Biomater· December 2021

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Fluctuating nonlinear spring theory: Strength, deformability, and toughness of biological nanoparticles from theoretical reconstruction of force-deformation spectra.
Farkhad Maksudov, Olga Kononova, Aida Llauró, Alvaro Ortega-Esteban, Trevor Douglas, Kenneth A Marx

Acta Biomater· March 2021

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Botulinum Endopeptidase: SAXS Experiments and MD Simulations Reveal Extended Solution Structures That Account for Its Biochemical Properties.
Raj Kumar, Farkhad Maksudov, Olga Kononova, Kenneth A Marx, Valeri Barsegov

J Phys Chem B· July 2020

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Regulatory element in fibrin triggers tension-activated transition from catch to slip bonds.
Rustem I Litvinov, Olga Kononova, Artem Zhmurov, Kenneth A Marx, Valeri Barsegov

Proc Natl Acad Sci U S A· August 2018

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TensorCalculator: exploring the evolution of mechanical stress in the CCMV capsid.
Olga Kononova, Farkhad Maksudov, Kenneth A Marx, Valeri Barsegov

J Phys Condens Matter· January 2018

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Dynamic Transition from α-Helices to β-Sheets in Polypeptide Coiled-Coil Motifs.
Kirill A Minin, Artem Zhmurov, Kenneth A Marx, Prashant K Purohit, Valeri Barsegov

J Am Chem Soc· November 2017

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SOP-GPU: influence of solvent-induced hydrodynamic interactions on dynamic structural transitions in protein assemblies.
Andrey Alekseenko, Olga Kononova, Yaroslav Kholodov, Kenneth A Marx, Valeri Barsegov

J Comput Chem· June 2016

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Fluctuating Nonlinear Spring Model of Mechanical Deformation of Biological Particles.
Olga Kononova, Joost Snijder, Yaroslav Kholodov, Kenneth A Marx, Gijs J L Wuite

PLoS Comput Biol· January 2016

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Tubulin bond energies and microtubule biomechanics determined from nanoindentation in silico.
Olga Kononova, Yaroslav Kholodov, Kelly E Theisen, Kenneth A Marx, Ruxandra I Dima

J Am Chem Soc· December 2014

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Homopolymer tract organization in the human malarial parasite Plasmodium falciparum and related Apicomplexan parasites.
Karen Russell, Chia-Ho Cheng, Jeffrey W Bizzaro, Nadia Ponts, Richard D Emes, Kenneth A Marx

BMC Genomics· October 2014

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Structural transitions and energy landscape for Cowpea Chlorotic Mottle Virus capsid mechanics from nanomanipulation in vitro and in silico.
Olga Kononova, Joost Snijder, Melanie Brasch, Jeroen Cornelissen, Ruxandra I Dima, Kenneth A Marx

Biophys J· October 2013

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Quartz crystal microbalance measurements of mitochondrial depolarization predicting chemically induced toxicity of vascular cells and macrophages.
Abiche H Dewilde, Gang Wang, Jianping Zhang, Kenneth A Marx, Joel M Therrien

Anal Biochem· August 2013

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Molecular mechanisms, thermodynamics, and dissociation kinetics of knob-hole interactions in fibrin.
Olga Kononova, Rustem I Litvinov, Artem Zhmurov, Andrey Alekseenko, Chia Ho Cheng, Kenneth A Marx

J Biol Chem· August 2013

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