Publications by authors named "Kodai Machida"

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Structural insights into the role of eIF3 in translation mediated by the HCV IRES.
Wakana Iwasaki, Kazuhiro Kashiwagi, Ayako Sakamoto, Madoka Nishimoto, Mari Takahashi, Kodai Machida

Proc Natl Acad Sci U S A· December 2025

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eIF2D promotes 40S ribosomal subunit recycling during intrinsic ribosome destabilization.
Kazuya Ichihara, Taichi Shiraishi, Yuhei Chadani, Yuki Kito, Chisa Shiraishi, Kodai Machida

Nucleic Acids Res· November 2025

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Canonical translation factors eIF1A and eIF5B modulate the initiation step of repeat-associated non-AUG translation.
Hayato Ito, Kodai Machida, Yuzo Fujino, Mayuka Hasumi, Soyoka Sakamoto

Nucleic Acids Res· September 2025

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Dissecting the mechanism of NOP56 GGCCUG repeat-associated non-AUG translation using cell-free translation systems.
Mayuka Hasumi, Hayato Ito, Kodai Machida, Tatsuya Niwa, Tomoya Taminato

J Biol Chem· April 2025

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Sporogen-AO1 inhibits eukaryotic translation elongation.
Kodai Machida, Shotaro Noseda, Seraya Miki, Mayumi Yuasa-Sunagawa, Hiroaki Imataka

J Antibiot (Tokyo)· April 2025

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Polyamines enhance repeat-associated non-AUG translation from CCUG repeats by stabilizing the tertiary structure of RNA.
Akihiro Oguro, Takeshi Uemura, Kodai Machida, Kanta Kitajiri, Ayasa Tajima

J Biol Chem· March 2025

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High-throughput screening for a SARS-CoV-2 frameshifting inhibitor using a cell-free protein synthesis system.
Kodai Machida, Rin Tanaka, Seraya Miki, Shotaro Noseda, Mayumi Yuasa-Sunagawa

Biotechniques· April 2024

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Reconstitution of C9orf72 GGGGCC repeat-associated non-AUG translation with purified human translation factors.
Hayato Ito, Kodai Machida, Mayuka Hasumi, Morio Ueyama, Yoshitaka Nagai

Sci Rep· December 2023

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Nascent peptide-induced translation discontinuation in eukaryotes impacts biased amino acid usage in proteomes.
Yosuke Ito, Yuhei Chadani, Tatsuya Niwa, Ayako Yamakawa, Kodai Machida

Nat Commun· December 2022

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An Reconstitution System Defines the Defective Step in the Biogenesis of Mutated β-Actin Proteins.
Kodai Machida, Shoma Miyawaki, Kuru Kanzawa, Taiki Hakushi, Tomonori Nakai

ACS Synth Biol· November 2021

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Distinct roles and actions of protein disulfide isomerase family enzymes in catalysis of nascent-chain disulfide bond formation.
Chihiro Hirayama, Kodai Machida, Kentaro Noi, Tadayoshi Murakawa, Masaki Okumura

iScience· April 2021

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eIF4G-driven translation initiation of downstream ORFs in mammalian cells.
Risa Nobuta, Kodai Machida, Misaki Sato, Satoshi Hashimoto, Yasuhito Toriumi

Nucleic Acids Res· October 2020

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Translation efficiency affects the sequence-independent +1 ribosomal frameshifting by polyamines.
Akihiro Oguro, Tomoaki Shigeta, Kodai Machida, Tomoaki Suzuki, Takeo Iwamoto

J Biochem· August 2020

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HCV IRES Captures an Actively Translating 80S Ribosome.
Takeshi Yokoyama, Kodai Machida, Wakana Iwasaki, Tomoaki Shigeta, Madoka Nishimoto

Mol Cell· June 2019

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Dynamic interaction of poly(A)-binding protein with the ribosome.
Kodai Machida, Tomoaki Shigeta, Yuki Yamamoto, Takuhiro Ito, Yuri Svitkin

Sci Rep· November 2018

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Huntingtin Polyglutamine-Dependent Protein Aggregation in Reconstituted Cells.
Kodai Machida, Kuru Kanzawa, Tomoaki Shigeta, Yuki Yamamoto, Kanta Tsumoto

ACS Synth Biol· February 2018

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Large-scale aggregation analysis of eukaryotic proteins reveals an involvement of intrinsically disordered regions in protein folding.
Eri Uemura, Tatsuya Niwa, Shintaro Minami, Kazuhiro Takemoto, Satoshi Fukuchi, Kodai Machida

Sci Rep· January 2018

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Cell-free analysis of polyQ-dependent protein aggregation and its inhibition by chaperone proteins.
Kodai Machida, Tomoaki Shigeta, Ayano Kobayashi, Ai Masumoto, Yuna Hidaka

J Biotechnol· December 2016

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Structural basis of Cu, Zn-superoxide dismutase amyloid fibril formation involves interaction of multiple peptide core regions.
Masataka Ida, Mizuho Ando, Masayuki Adachi, Asumi Tanaka, Kodai Machida

J Biochem· February 2016

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Identification of the T-complex protein as a binding partner for newly synthesized cytoplasmic dynein intermediate chain 2.
Aysun Özdemir, Kodai Machida, Hiroaki Imataka, Andrew D Catling

Biochem Biophys Res Commun· January 2016

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Production methods for viral particles.
Kodai Machida, Hiroaki Imataka

Biotechnol Lett· April 2015

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A translation system reconstituted with human factors proves that processing of encephalomyocarditis virus proteins 2A and 2B occurs in the elongation phase of translation without eukaryotic release factors.
Kodai Machida, Satoshi Mikami, Mamiko Masutani, Kurumi Mishima, Tominari Kobayashi

J Biol Chem· November 2014

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Human cell extract-derived cell-free systems for virus synthesis.
Tominari Kobayashi, Kodai Machida, Hiroaki Imataka

Methods Mol Biol· September 2014

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Purification and visualization of encephalomyocarditisvirus synthesized by an in vitro protein expression system derived from mammalian cell extract.
Tominari Kobayashi, Jun Yukigai, Kosaku Ueda, Kodai Machida, Mamiko Masutani

Biotechnol Lett· March 2013

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