Publications by authors named "Kumaran Kandasamy"

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A widespread role for SLC transmembrane transporters in resistance to cytotoxic drugs.
Enrico Girardi, Adrián César-Razquin, Sabrina Lindinger, Konstantinos Papakostas, Justyna Konecka, Richard Kumaran Kandasamy

Nat Chem Biol· April 2020

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Viral immune modulators perturb the human molecular network by common and unique strategies.
Andreas Pichlmair, Kumaran Kandasamy, Gualtiero Alvisi, Orla Mulhern, Roberto Sacco

Nature· July 2012

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A proteogenomic approach to map the proteome of an unsequenced pathogen - Leishmania donovani.
Harsh Pawar, Nandini A Sahasrabuddhe, Santosh Renuse, Shivakumar Keerthikumar, Jyoti Sharma, Kumaran Kandasamy

Proteomics· March 2012

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A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry.
Raghothama Chaerkady, Dhanashree S Kelkar, Babylakshmi Muthusamy, Kumaran Kandasamy, Sutopa B Dwivedi

Genome Res· November 2011

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A Signaling Network of Thyroid-Stimulating Hormone.
Renu Goel, Rajesh Raju, Jagadeesha Maharudraiah, Ghantasala S Sameer Kumar, Krishna Ghosh, Kumaran Kandasamy

J Proteomics Bioinform· October 2011

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Quantitative tissue proteomics of esophageal squamous cell carcinoma for novel biomarker discovery.
Harsh Pawar, Manoj Kumar Kashyap, Nandini A Sahasrabuddhe, Santosh Renuse, H C Harsha, Kumaran Kandasamy

Cancer Biol Ther· September 2011

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Systematic evaluation of alternating CID and ETD fragmentation for phosphorylated peptides.
Min-Sik Kim, Jun Zhong, Kumaran Kandasamy, Bernard Delanghe, Akhilesh Pandey

Proteomics· June 2011

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The interactome of a PTB domain-containing adapter protein, Odin, revealed by SILAC.
Jun Zhong, Raghothama Chaerkady, Kumaran Kandasamy, Marjan Gucek, Robert N Cole

J Proteomics· March 2011

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Identification of Novel Phosphorylation Motifs Through an Integrative Computational and Experimental Analysis of the Human Phosphoproteome.
Ramars Amanchy, Kumaran Kandasamy, Suresh Mathivanan, Balamurugan Periaswamy, Raghunath Reddy

J Proteomics Bioinform· January 2011

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Identifying targets of miR-143 using a SILAC-based proteomic approach.
Yi Yang, Raghothama Chaerkady, Kumaran Kandasamy, Tai-Chung Huang, Lakshmi Dhevi N Selvan

Mol Biosyst· October 2010

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SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome.
Manoj Kumar Kashyap, H C Harsha, Santosh Renuse, Harsh Pawar, Nandini A Sahasrabuddhe, Kumaran Kandasamy

Cancer Biol Ther· October 2010

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Assessment of resolution parameters for CID-based shotgun proteomic experiments on the LTQ-Orbitrap mass spectrometer.
Min-Sik Kim, Kumaran Kandasamy, Raghothama Chaerkady, Akhilesh Pandey

J Am Soc Mass Spectrom· September 2010

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The BioPAX community standard for pathway data sharing.
Emek Demir, Michael P Cary, Suzanne Paley, Ken Fukuda, Christian Lemer, Kumaran Kandasamy

Nat Biotechnol· September 2010

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Comparative proteomics of human embryonic stem cells and embryonal carcinoma cells.
Raghothama Chaerkady, Candace L Kerr, Kumaran Kandasamy, Arivusudar Marimuthu, John D Gearhart

Proteomics· April 2010

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Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology.
T S Keshava Prasad, Kumaran Kandasamy, Akhilesh Pandey

Methods Mol Biol· February 2010

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NetPath: a public resource of curated signal transduction pathways.
Kumaran Kandasamy, S Sujatha Mohan, Rajesh Raju, Shivakumar Keerthikumar, Ghantasala S Sameer Kumar

Genome Biol· January 2010

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Prediction of candidate primary immunodeficiency disease genes using a support vector machine learning approach.
Shivakumar Keerthikumar, Sahely Bhadra, Kumaran Kandasamy, Rajesh Raju, Y L Ramachandra

DNA Res· December 2009

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PathBuilder--open source software for annotating and developing pathway resources.
Kumaran Kandasamy, Shivakumar Keerthikumar, Rajesh Raju, T S Keshava Prasad, Y L Ramachandra

Bioinformatics· November 2009

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Evaluation of several MS/MS search algorithms for analysis of spectra derived from electron transfer dissociation experiments.
Kumaran Kandasamy, Akhilesh Pandey, Henrik Molina

Anal Chem· September 2009

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A compendium of potential biomarkers of pancreatic cancer.
H C Harsha, Kumaran Kandasamy, Prathibha Ranganathan, Sandhya Rani, Subhashri Ramabadran

PLoS Med· April 2009

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RAPID: Resource of Asian Primary Immunodeficiency Diseases.
Shivakumar Keerthikumar, Rajesh Raju, Kumaran Kandasamy, Atsushi Hijikata, Subhashri Ramabadran

Nucleic Acids Res· January 2009

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Human Proteinpedia: a unified discovery resource for proteomics research.
Kumaran Kandasamy, Shivakumar Keerthikumar, Renu Goel, Suresh Mathivanan, Nandini Patankar

Nucleic Acids Res· January 2009

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Human Protein Reference Database--2009 update.
T S Keshava Prasad, Renu Goel, Kumaran Kandasamy, Shivakumar Keerthikumar, Sameer Kumar

Nucleic Acids Res· January 2009

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Comprehensive comparison of collision induced dissociation and electron transfer dissociation.
Henrik Molina, Rune Matthiesen, Kumaran Kandasamy, Akhilesh Pandey

Anal Chem· July 2008

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Human Proteinpedia enables sharing of human protein data.
Suresh Mathivanan, Mukhtar Ahmed, Natalie G Ahn, Hainard Alexandre, Ramars Amanchy, Kumaran Kandasamy

Nat Biotechnol· February 2008

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