Publications by authors named "Larry Smarr"

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Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics.
Arianna Basile, Almut Heinken, Johannes Hertel, Larry Smarr, Weizhong Li

Gut Microbes· July 2023

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Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity.
Xin Fang, Yoshiki Vázquez-Baeza, Emmanuel Elijah, Fernando Vargas, Gail Ackermann, Larry Smarr

Inflamm Bowel Dis· April 2021

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De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments.
Bahar Behsaz, Hosein Mohimani, Alexey Gurevich, Andrey Prjibelski, Mark Fisher, Larry Smarr

Cell Syst· January 2020

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Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.
Qiyun Zhu, Uyen Mai, Wayne Pfeiffer, Stefan Janssen, Francesco Asnicar, Larry Smarr

Nat Commun· December 2019

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Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads.
Jon G Sanders, Sergey Nurk, Rodolfo A Salido, Jeremiah Minich, Zhenjiang Z Xu, Larry Smarr

Genome Biol· October 2019

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Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease.
Robert H Mills, Yoshiki Vázquez-Baeza, Qiyun Zhu, Lingjing Jiang, James Gaffney, Larry Smarr

mSystems· February 2019

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Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians.
Celeste Allaband, Daniel McDonald, Yoshiki Vázquez-Baeza, Jeremiah J Minich, Anupriya Tripathi, Larry Smarr

Clin Gastroenterol Hepatol· January 2019

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Metagenomics-Based, Strain-Level Analysis of From a Time-Series of Microbiome Samples From a Crohn's Disease Patient.
Xin Fang, Jonathan M Monk, Sergey Nurk, Margarita Akseshina, Qiyun Zhu, Larry Smarr

Front Microbiol· October 2018

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Tracking Human Gut Microbiome Changes Resulting from a Colonoscopy.
Larry Smarr, Embriette R Hyde, Daniel McDonald, William J Sandborn, Rob Knight

Methods Inf Med· September 2018

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Are microbiome studies ready for hypothesis-driven research?
Anupriya Tripathi, Clarisse Marotz, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Se Jin Song, Larry Smarr

Curr Opin Microbiol· August 2018

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Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa.
Xin Fang, Jonathan M Monk, Nathan Mih, Bin Du, Anand V Sastry, Larry Smarr

BMC Syst Biol· June 2018

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Creating a 3D microbial and chemical snapshot of a human habitat.
Clifford A Kapono, James T Morton, Amina Bouslimani, Alexey V Melnik, Kayla Orlinsky, Larry Smarr

Sci Rep· February 2018

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Bringing the Dynamic Microbiome to Life with Animations.
Yoshiki Vázquez-Baeza, Antonio Gonzalez, Larry Smarr, Daniel McDonald, James T Morton

Cell Host Microbe· January 2017

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Toward more transparent and reproducible omics studies through a common metadata checklist and data publications.
Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon Anderson, Larry Smarr

OMICS· January 2014

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Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.
Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon Anderson, Larry Smarr

Big Data· December 2013

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Quantifying your body: a how-to guide from a systems biology perspective.
Larry Smarr

Biotechnol J· August 2012

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CAMERA: a community resource for metagenomics.
Rekha Seshadri, Saul A Kravitz, Larry Smarr, Paul Gilna, Marvin Frazier

PLoS Biol· March 2007

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