Publications by authors named "Lars Gabriel"

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Navigating Eukaryotic Genome Annotation Pipelines: A Route Map to Using BRAKER, Galba, and TSEBRA.
Tomáš Brůna, Lars Gabriel, Katharina J Hoff

Methods Mol Biol· August 2025

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Tiberius: end-to-end deep learning with an HMM for gene prediction.
Lars Gabriel, Felix Becker, Katharina J Hoff, Mario Stanke

Bioinformatics· November 2024

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BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA.
Lars Gabriel, Tomáš Brůna, Katharina J Hoff, Matthis Ebel, Alexandre Lomsadze

Genome Res· June 2024

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BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA.
Lars Gabriel, Tomáš Brůna, Katharina J Hoff, Matthis Ebel, Alexandre Lomsadze

bioRxiv· February 2024

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A reference genome for ecological restoration of the sunflower sea star, Pycnopodia helianthoides.
Lauren M Schiebelhut, Melissa B DeBiasse, Lars Gabriel, Katharina J Hoff, Michael N Dawson

J Hered· February 2024

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The structure of the tetraploid sour cherry 'Schattenmorelle' ( L.) genome reveals insights into its segmental allopolyploid nature.
Thomas W Wöhner, Ofere F Emeriewen, Alexander H J Wittenberg, Koen Nijbroek, Rui Peng Wang, Lars Gabriel

Front Plant Sci· December 2023

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Galba: genome annotation with miniprot and AUGUSTUS.
Tomáš Brůna, Heng Li, Joseph Guhlin, Daniel Honsel, Steffen Herbold, Lars Gabriel

BMC Bioinformatics· August 2023

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GALBA: Genome Annotation with Miniprot and AUGUSTUS.
Tomáš Brůna, Heng Li, Joseph Guhlin, Daniel Honsel, Steffen Herbold, Lars Gabriel

bioRxiv· April 2023

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The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads.
Thomas W Wöhner, Ofere F Emeriewen, Alexander H J Wittenberg, Harrie Schneiders, Ilse Vrijenhoek, Lars Gabriel

Genomics· November 2021

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TSEBRA: transcript selector for BRAKER.
Lars Gabriel, Katharina J Hoff, Tomáš Brůna, Mark Borodovsky, Mario Stanke

BMC Bioinformatics· November 2021

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Sulfoethylation of polysaccharides-A comparative study.
Lars Gabriel, Andreas Koschella, Antje Tied, Annett Pfeifer, Thomas Heinze

Carbohydr Polym· October 2020

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Modular synthesis of non-charged and ionic xylan carbamate derivatives from xylan carbonates.
Lars Gabriel, Martin Gericke, Thomas Heinze

Carbohydr Polym· March 2019

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Synthesis of xylan carbonates - An approach towards reactive polysaccharide derivatives showing self-assembling into nanoparticles.
Martin Gericke, Lars Gabriel, Katja Geitel, Stefan Benndorf, Poonam Trivedi

Carbohydr Polym· August 2018

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Traceless tosylhydrazone-based triazole formation: a metal-free alternative to strain-promoted azide-alkyne cycloaddition.
Sander S van Berkel, Sebastian Brauch, Lars Gabriel, Michael Henze, Sebastian Stark

Angew Chem Int Ed Engl· May 2012

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Seven-component reactions by sequential chemoselective Ugi-Mumm/Ugi-Smiles reactions.
Sebastian Brauch, Lars Gabriel, Bernhard Westermann

Chem Commun (Camb)· May 2010

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