Publications by authors named "Mario Stanke"

Claim this Profile
G
Genomic map of the functionally extinct northern white rhinoceros ().
Gaojianyong Wang, Marisa L Korody, Björn Brändl, Camilo Jose Hernandez-Toro, Christian Rohrandt, Mario Stanke

Proc Natl Acad Sci U S A· May 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Tiberius: end-to-end deep learning with an HMM for gene prediction.
Lars Gabriel, Felix Becker, Katharina J Hoff, Mario Stanke

Bioinformatics· November 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
L
learnMSA2: deep protein multiple alignments with large language and hidden Markov models.
Felix Becker, Mario Stanke

Bioinformatics· September 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
B
BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA.
Lars Gabriel, Tomáš Brůna, Katharina J Hoff, Matthis Ebel, Alexandre Lomsadze, Mario Stanke

Genome Res· June 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Comparative Genome Annotation.
Stefanie Nachtweide, Lars Romoth, Mario Stanke

Methods Mol Biol· May 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
B
BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA.
Lars Gabriel, Tomáš Brůna, Katharina J Hoff, Matthis Ebel, Alexandre Lomsadze, Mario Stanke

bioRxiv· February 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Classifying sex with volume-matched brain MRI.
Matthis Ebel, Martin Domin, Nicola Neumann, Carsten Oliver Schmidt, Martin Lotze, Mario Stanke

Neuroimage Rep· September 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Galba: genome annotation with miniprot and AUGUSTUS.
Tomáš Brůna, Heng Li, Joseph Guhlin, Daniel Honsel, Steffen Herbold, Mario Stanke

BMC Bioinformatics· August 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
GALBA: Genome Annotation with Miniprot and AUGUSTUS.
Tomáš Brůna, Heng Li, Joseph Guhlin, Daniel Honsel, Steffen Herbold, Mario Stanke

bioRxiv· April 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
L
learnMSA: learning and aligning large protein families.
Felix Becker, Mario Stanke

Gigascience· November 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Global, highly specific and fast filtering of alignment seeds.
Matthis Ebel, Giovanna Migliorelli, Mario Stanke

BMC Bioinformatics· June 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
End-to-end learning of evolutionary models to find coding regions in genome alignments.
Darvin Mertsch, Mario Stanke

Bioinformatics· March 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
TSEBRA: transcript selector for BRAKER.
Lars Gabriel, Katharina J Hoff, Tomáš Brůna, Mark Borodovsky, Mario Stanke

BMC Bioinformatics· November 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A 20-kb lineage-specific genomic region tames virulence in pathogenic amphidiploid Verticillium longisporum.
Rebekka Harting, Jessica Starke, Harald Kusch, Stefanie Pöggeler, Isabel Maurus, Mario Stanke

Mol Plant Pathol· August 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The genomic basis of evolutionary differentiation among honey bees.
Bertrand Fouks, Philipp Brand, Hung N Nguyen, Jacob Herman, Francisco Camara, Mario Stanke

Genome Res· July 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Application of YOLOv4 for Detection and Motion Monitoring of Red Foxes.
Anne K Schütz, Verena Schöler, E Tobias Krause, Mareike Fischer, Thomas Müller, Mario Stanke

Animals (Basel)· June 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
Strains Induce Transcriptional and Morphological Changes and Reduce Root Colonization of spp.
Rebekka Harting, Alexandra Nagel, Kai Nesemann, Annalena M Höfer, Emmanouil Bastakis, Mario Stanke

Front Microbiol· May 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
B
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database.
Tomáš Brůna, Katharina J Hoff, Alexandre Lomsadze, Mario Stanke, Mark Borodovsky

NAR Genom Bioinform· March 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Enhanced genome assembly and a new official gene set for Tribolium castaneum.
Nicolae Herndon, Jennifer Shelton, Lizzy Gerischer, Panos Ioannidis, Maria Ninova, Mario Stanke

BMC Genomics· January 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
V
VARUS: sampling complementary RNA reads from the sequence read archive.
Mario Stanke, Willy Bruhn, Felix Becker, Katharina J Hoff

BMC Bioinformatics· November 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
W
Whole-Genome Annotation with BRAKER.
Katharina J Hoff, Alexandre Lomsadze, Mark Borodovsky, Mario Stanke

Methods Mol Biol· August 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Multi-Genome Annotation with AUGUSTUS.
Stefanie Nachtweide, Mario Stanke

Methods Mol Biol· August 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Predicting Genes in Single Genomes with AUGUSTUS.
Katharina J Hoff, Mario Stanke

Curr Protoc Bioinformatics· March 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Effects of adult temperature on gene expression in a butterfly: identifying pathways associated with thermal acclimation.
Kristin Franke, Isabell Karl, Tonatiuh Pena Centeno, Barbara Feldmeyer, Christian Lassek, Mario Stanke

BMC Evol Biol· January 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.
Jingtao Lilue, Anthony G Doran, Ian T Fiddes, Monica Abrudan, Joel Armstrong, Mario Stanke

Nat Genet· November 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis