Publications by authors named "Lisa Simirenko"

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gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes.
Lisa Simirenko, Jan-Fang Cheng, Ian Blaby

Front Bioeng Biotechnol· August 2023

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An Integrated Computer-Aided Design and Manufacturing Workflow for Synthetic Biology.
Ernst Oberortner, Robert Evans, Xianwei Meng, Sangeeta Nath, Hector Plahar, Lisa Simirenko

Methods Mol Biol· March 2021

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A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila.
Charless C Fowlkes, Kelly B Eckenrode, Meghan D Bragdon, Miriah Meyer, Zeba Wunderlich, Lisa Simirenko

PLoS Genet· October 2011

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Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions.
Stewart MacArthur, Xiao-Yong Li, Jingyi Li, James B Brown, Hou Cheng Chu, Lisa Simirenko

Genome Biol· January 2010

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A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.
Charless C Fowlkes, Cris L Luengo Hendriks, Soile V E Keränen, Gunther H Weber, Oliver Rübel, Lisa Simirenko

Cell· April 2008

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Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.
Xiao-yong Li, Stewart MacArthur, Richard Bourgon, David Nix, Daniel A Pollard, Lisa Simirenko

PLoS Biol· February 2008

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Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline.
Cris L Luengo Hendriks, Soile V E Keränen, Charless C Fowlkes, Lisa Simirenko, Gunther H Weber

Genome Biol· May 2007

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