Publications by authors named "Logan S Ahlstrom"

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Selecting Conformational Ensembles Using Residual Electron and Anomalous Density (READ).
Loïc Salmon, Logan S Ahlstrom, James C A Bardwell, Scott Horowitz

Methods Mol Biol· February 2019

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Reply to 'Misreading chaperone-substrate complexes from random noise'.
Scott Horowitz, Loïc Salmon, Philipp Koldewey, Logan S Ahlstrom, Raoul Martin

Nat Struct Mol Biol· November 2018

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The Mechanism of HdeA Unfolding and Chaperone Activation.
Loïc Salmon, Frederick Stull, Sabrina Sayle, Claire Cato, Şerife Akgül, Logan S Ahlstrom

J Mol Biol· January 2018

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Effect of the Crystal Environment on Side-Chain Conformational Dynamics in Cyanovirin-N Investigated through Crystal and Solution Molecular Dynamics Simulations.
Logan S Ahlstrom, Ivan I Vorontsov, Jun Shi, Osamu Miyashita

PLoS One· August 2017

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Exploring Protein-Nanoparticle Interactions with Coarse-Grained Protein Folding Models.
Shuai Wei, Logan S Ahlstrom, Charles L Brooks

Small· May 2017

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Corrigendum: Determining crystal structures through crowdsourcing and coursework.
Scott Horowitz, Brian Koepnick, Raoul Martin, Agnes Tymieniecki, Amanda A Winburn, Logan S Ahlstrom

Nat Commun· October 2016

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Determining crystal structures through crowdsourcing and coursework.
Scott Horowitz, Brian Koepnick, Raoul Martin, Agnes Tymieniecki, Amanda A Winburn, Logan S Ahlstrom

Nat Commun· September 2016

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Capturing a Dynamic Chaperone-Substrate Interaction Using NMR-Informed Molecular Modeling.
Loïc Salmon, Logan S Ahlstrom, Scott Horowitz, Alex Dickson, Charles L Brooks

J Am Chem Soc· August 2016

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Visualizing chaperone-assisted protein folding.
Scott Horowitz, Loïc Salmon, Philipp Koldewey, Logan S Ahlstrom, Raoul Martin

Nat Struct Mol Biol· July 2016

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Coupled folding and binding with 2D Window-Exchange Umbrella Sampling.
Alex Dickson, Logan S Ahlstrom, Charles L Brooks

J Comput Chem· March 2016

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Multiscale modeling of a conditionally disordered pH-sensing chaperone.
Logan S Ahlstrom, Sean M Law, Alex Dickson, Charles L Brooks

J Mol Biol· April 2015

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Predicting protein backbone chemical shifts from Cα coordinates: extracting high resolution experimental observables from low resolution models.
Aaron T Frank, Sean M Law, Logan S Ahlstrom, Charles L Brooks

J Chem Theory Comput· January 2015

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Hamiltonian Mapping Revisited: Calibrating Minimalist Models to Capture Molecular Recognition by Intrinsically Disordered Proteins.
Sean M Law, Logan S Ahlstrom, Afra Panahi, Charles L Brooks

J Phys Chem Lett· October 2014

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Packing interface energetics in different crystal forms of the λ Cro dimer.
Logan S Ahlstrom, Osamu Miyashita

Proteins· July 2014

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Network visualization of conformational sampling during molecular dynamics simulation.
Logan S Ahlstrom, Joseph Lee Baker, Kent Ehrlich, Zachary T Campbell, Sunita Patel

J Mol Graph Model· November 2013

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Binding and folding of the small bacterial chaperone HdeA.
Logan S Ahlstrom, Alex Dickson, Charles L Brooks

J Phys Chem B· October 2013

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Molecular simulation uncovers the conformational space of the λ Cro dimer in solution.
Logan S Ahlstrom, Osamu Miyashita

Biophys J· November 2011

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The N-terminus of the intrinsically disordered protein α-synuclein triggers membrane binding and helix folding.
Tim Bartels, Logan S Ahlstrom, Avigdor Leftin, Frits Kamp, Christian Haass

Biophys J· October 2010

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