Publications by authors named "Loic Royer"

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inTRACKtive: a web-based tool for interactive cell tracking visualization.
Teun A P M Huijben, Ashley G Anderson, Andrew Sweet, Erin Hoops, Connor Larsen, Loïc A Royer

Nat Methods· November 2025

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Ultrack: pushing the limits of cell tracking across biological scales.
Jordão Bragantini, Ilan Theodoro, Xiang Zhao, Teun A P M Huijben, Eduardo Hirata-Miyasaki, Loïc A Royer

Nat Methods· November 2025

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PCM1 coordinates centrosome asymmetry with polarized endosome dynamics to regulate daughter cell fate.
Xiang Zhao, Vincent Mouilleau, Yiqi Wang, Ahmet Can Solak, Jason Q Garcia, Loïc A Royer

Nat Commun· November 2025

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Repeated extrinsic and anisotropic mechanical inputs promote C. elegans polarized adherens junction elongation.
Xinyi Yang, Teresa Ferraro, Kelly Molnar, Julien Pontabry, Sam-Rayden Malanda, Loïc Royer

Dev Cell· October 2025

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Single-cell transcriptional dynamics in a living vertebrate.
Elizabeth Eck, Bruno Moretti, Brandon H Schlomann, Jordão Bragantini, Merlin Lange, Loïc A Royer

bioRxiv· June 2025

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Maximizing single cell dissociation protocol for individual zebrafish embryo.
Shruthi VijayKumar, Michael Borja, Norma Neff, Loïc A Royer, Merlin Lange

MethodsX· December 2024

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A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors.
Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordão Bragantini, Sarah Ancheta, Loïc A Royer

Cell· November 2024

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Ultrack: pushing the limits of cell tracking across biological scales.
Jordão Bragantini, Ilan Theodoro, Xiang Zhao, Teun A P M Huijben, Eduardo Hirata-Miyasaki, Loïc A Royer

bioRxiv· September 2024

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Omega - harnessing the power of large language models for bioimage analysis.
Loïc A Royer

Nat Methods· August 2024

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PCM1 conveys centrosome asymmetry to polarized endosome dynamics in regulating daughter cell fate.
Xiang Zhao, Yiqi Wang, Vincent Mouilleau, Ahmet Can Solak, Jason Garcia, Loic Royer

bioRxiv· June 2024

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Pluripotency of a founding field: rebranding developmental biology.
Crystal D Rogers, Chris Amemiya, Swathi Arur, Leslie Babonis, Michael Barresi, Loic Royer

Development· February 2024

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OME-Zarr: a cloud-optimized bioimaging file format with international community support.
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John Bogovic, Jordão Bragantini, Loic A Royer

Histochem Cell Biol· September 2023

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The future of bioimage analysis: a dialog between mind and machine.
Loïc A Royer

Nat Methods· July 2023

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OME-Zarr: a cloud-optimized bioimaging file format with international community support.
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John Bogovic, Jordão Bragantini, Loic A Royer

bioRxiv· May 2023

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Neuropilin-1 Mediates SARS-CoV-2 Infection of Astrocytes in Brain Organoids, Inducing Inflammation Leading to Dysfunction and Death of Neurons.
Weili Kong, Mauricio Montano, Michael J Corley, Ekram Helmy, Hirofumi Kobayashi, Loic A Royer

mBio· December 2022

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Self-supervised deep learning encodes high-resolution features of protein subcellular localization.
Hirofumi Kobayashi, Keith C Cheveralls, Manuel D Leonetti, Loic A Royer

Nat Methods· August 2022

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DaXi-high-resolution, large imaging volume and multi-view single-objective light-sheet microscopy.
Bin Yang, Merlin Lange, Alfred Millett-Sikking, Xiang Zhao, Jordão Bragantini, Loic A Royer

Nat Methods· April 2022

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OpenCell: Endogenous tagging for the cartography of human cellular organization.
Nathan H Cho, Keith C Cheveralls, Andreas-David Brunner, Kibeom Kim, André C Michaelis, Loïc A Royer

Science· March 2022

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Colocalization Analysis for Cryosectioned and Immunostained Tissue Samples with or without Label Retention Expansion Microscopy (LR-ExM) by JACoP.
Xiang Zhao, Jason Garcia, Loic A Royer, Su Guo

Bio Protoc· March 2022

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ZAF, the first open source fully automated feeder for aquatic facilities.
Merlin Lange, AhmetCan Solak, Shruthi Vijay Kumar, Hirofumi Kobayashi, Bin Yang, Loïc Alain Royer

Elife· December 2021

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Elimination of nurse cell nuclei that shuttle into oocytes during oogenesis.
Zehra Ali-Murthy, Richard D Fetter, Wanpeng Wang, Bin Yang, Loic A Royer

J Cell Biol· July 2021

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Pycro-Manager: open-source software for customized and reproducible microscope control.
Henry Pinkard, Nico Stuurman, Ivan E Ivanov, Nicholas M Anthony, Wei Ouyang, Loïc A Royer

Nat Methods· March 2021

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CLIJ: GPU-accelerated image processing for everyone.
Robert Haase, Loic A Royer, Peter Steinbach, Deborah Schmidt, Alexandr Dibrov

Nat Methods· January 2020

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Applications, promises, and pitfalls of deep learning for fluorescence image reconstruction.
Chinmay Belthangady, Loic A Royer

Nat Methods· December 2019

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