Publications by authors named "Loren Hansen"

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Bioinformatic screen with clinical validation for the identification of novel stool based mRNA biomarkers for the detection of colorectal lesions including advanced adenoma.
Houcong Liu, Loren Hansen, Changpu Song, Haijiu Lin, Dan Chen

Sci Rep· August 2025

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An essential role for the piRNA pathway in regulating the ribosomal RNA pool in C. elegans.
Lamia Wahba, Loren Hansen, Andrew Z Fire

Dev Cell· August 2021

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Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA.
Nathan Wan, David Weinberg, Tzu-Yu Liu, Katherine Niehaus, Eric A Ariazi, Loren Hansen

BMC Cancer· August 2019

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Correction for Deng et al., "HMGN1 Modulates Nucleosome Occupancy and DNase I Hypersensitivity at the CpG Island Promoters of Embryonic Stem Cells".
Tao Deng, Z Iris Zhu, Shaofei Zhang, Fenfei Leng, Srujana Cherukuri, Loren Hansen

Mol Cell Biol· June 2018

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Correction: Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems.
Sukrit Silas, Patricia Lucas-Elio, Simon A Jackson, Alejandra Aroca-Crevillén, Loren L Hansen

Elife· April 2018

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Intricate and Cell Type-Specific Populations of Endogenous Circular DNA (eccDNA) in and .
Massa J Shoura, Idan Gabdank, Loren Hansen, Jason Merker, Jason Gotlib

G3 (Bethesda)· October 2017

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Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems.
Sukrit Silas, Patricia Lucas-Elio, Simon A Jackson, Alejandra Aroca-Crevillén, Loren L Hansen

Elife· August 2017

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On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires.
Sukrit Silas, Kira S Makarova, Sergey Shmakov, David Páez-Espino, Georg Mohr, Loren L Hansen

mBio· July 2017

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ASH1L Links Histone H3 Lysine 36 Dimethylation to MLL Leukemia.
Li Zhu, Qin Li, Stephen H K Wong, Min Huang, Brianna J Klein, Loren Hansen

Cancer Discov· July 2016

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An Abundant Class of Non-coding DNA Can Prevent Stochastic Gene Silencing in the C. elegans Germline.
Christian Frøkjær-Jensen, Nimit Jain, Loren Hansen, M Wayne Davis, Yongbin Li

Cell· July 2016

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Landscape of target:guide homology effects on Cas9-mediated cleavage.
Becky Xu Hua Fu, Loren L Hansen, Karen L Artiles, Michael L Nonet, Andrew Z Fire

Nucleic Acids Res· December 2014

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HMGN1 modulates nucleosome occupancy and DNase I hypersensitivity at the CpG island promoters of embryonic stem cells.
Tao Deng, Z Iris Zhu, Shaofei Zhang, Fenfei Leng, Srujana Cherukuri, Loren Hansen

Mol Cell Biol· August 2013

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Differences in local genomic context of bound and unbound motifs.
Loren Hansen, Leonardo Mariño-Ramírez, David Landsman

Gene· September 2012

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Analysis of biological features associated with meiotic recombination hot and cold spots in Saccharomyces cerevisiae.
Loren Hansen, Nak-Kyeong Kim, Leonardo Mariño-Ramírez, David Landsman

PLoS One· May 2012

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Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome.
Loren Hansen, Leonardo Mariño-Ramírez, David Landsman

Nucleic Acids Res· April 2010

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Controlling feature selection in random forests of decision trees using a genetic algorithm: classification of class I MHC peptides.
Loren Hansen, Ernestine A Lee, Kevin Hestir, Lewis T Williams, David Farrelly

Comb Chem High Throughput Screen· June 2009

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Local DNA topography correlates with functional noncoding regions of the human genome.
Stephen C J Parker, Loren Hansen, Hatice Ozel Abaan, Thomas D Tullius, Elliott H Margulies

Science· April 2009

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Nondispersive two-electron wave packets in a helium atom.
Matt Kalinski, Loren Hansen, David Farrelly

Phys Rev Lett· September 2005

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