Publications by authors named "Thomas D Tullius"

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Experimental maps of DNA structure at nucleotide resolution distinguish intrinsic from protein-induced DNA deformations.
Robert N Azad, Dana Zafiropoulos, Douglas Ober, Yining Jiang, Tsu-Pei Chiu, Thomas D Tullius

Nucleic Acids Res· March 2018

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GBshape: a genome browser database for DNA shape annotations.
Tsu-Pei Chiu, Lin Yang, Tianyin Zhou, Bradley J Main, Stephen C J Parker, Thomas D Tullius

Nucleic Acids Res· January 2015

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Chemical probing of RNA with the hydroxyl radical at single-atom resolution.
Shakti Ingle, Robert N Azad, Swapan S Jain, Thomas D Tullius

Nucleic Acids Res· November 2014

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Comparative analysis of metazoan chromatin organization.
Joshua W K Ho, Youngsook L Jung, Tao Liu, Burak H Alver, Soohyun Lee, Thomas D Tullius

Nature· August 2014

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A computational method to search for DNA structural motifs in functional genomic elements.
Stephen C J Parker, Aaron Harlap, Thomas D Tullius

Methods Mol Biol· December 2011

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A map of minor groove shape and electrostatic potential from hydroxyl radical cleavage patterns of DNA.
Eric P Bishop, Remo Rohs, Stephen C J Parker, Sean M West, Peng Liu, Thomas D Tullius

ACS Chem Biol· December 2011

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DNA shape, genetic codes, and evolution.
Stephen C J Parker, Thomas D Tullius

Curr Opin Struct Biol· June 2011

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The relationship between fine scale DNA structure, GC content, and functional elements in 1% of the human genome.
Stephen C J Parker, Elliott H Margulies, Thomas D Tullius

Genome Inform· July 2009

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Local DNA topography correlates with functional noncoding regions of the human genome.
Stephen C J Parker, Loren Hansen, Hatice Ozel Abaan, Thomas D Tullius, Elliott H Margulies

Science· April 2009

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Footprinting protein-DNA complexes using the hydroxyl radical.
Swapan S Jain, Thomas D Tullius

Nat Protoc· September 2008

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Effects of discontinuities in the DNA template on abortive initiation and promoter escape by Escherichia coli RNA polymerase.
Qun Wang, Thomas D Tullius, Judith R Levin

J Biol Chem· September 2007

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Detection of DNA structural motifs in functional genomic elements.
Jason A Greenbaum, Stephen C J Parker, Thomas D Tullius

Genome Res· June 2007

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Construction of a genome-scale structural map at single-nucleotide resolution.
Jason A Greenbaum, Bo Pang, Thomas D Tullius

Genome Res· June 2007

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Nature· June 2007

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Platinum anticancer drug damage enforces a particular rotational setting of DNA in nucleosomes.
Andrew J Danford, Dong Wang, Qun Wang, Thomas D Tullius, Stephen J Lippard

Proc Natl Acad Sci U S A· August 2005

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Mapping nucleic acid structure by hydroxyl radical cleavage.
Thomas D Tullius, Jason A Greenbaum

Curr Opin Chem Biol· April 2005

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Research Corporation and John Schaefer.
Don Deardorff, Peter Dorhout, Nancy Haegel, Brent L Iverson, Michael Morrison, Thomas D Tullius

Science· November 2004

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Gapped DNA is anisotropically bent.
Hong Guo, Thomas D Tullius

Proc Natl Acad Sci U S A· April 2003

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A general synthesis of specifically deuterated nucleotides for studies of DNA and RNA.
Bingzi Chen, Elizabeth R Jamieson, Thomas D Tullius

Bioorg Med Chem Lett· November 2002

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Interchange of DNA-binding modes in the deformed and ultrabithorax homeodomains: a structural role for the N-terminal arm.
Richard W Frazee, Jennifer A Taylor, Thomas D Tullius

J Mol Biol· November 2002

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Probing DNA structure with hydroxyl radicals.
Thomas D Tullius

Curr Protoc Nucleic Acid Chem· February 2002

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Oxidative Strand Scission of Nucleic Acids: Routes Initiated by Hydrogen Abstraction from the Sugar Moiety.
Wendy Knapp Pogozelski, Thomas D. Tullius

Chem Rev· May 1998

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