Publications by authors named "Mackenzie Johnson"

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Nucleotide context models outperform protein language models for predicting antibody affinity maturation.
Mackenzie M Johnson, Kevin Sung, Hugh K Haddox, Ashni A Vora, Tatsuya Araki

PLoS Comput Biol· December 2025

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Human stem cell models for group 3 medulloblastoma uncover JARID1B as a regulator of the chromatin landscape.
Zulekha A Qadeer, Elise Hou, Dara Siegel, Samantha Westelman, Brian Gudenas, Mackenzie O Johnson

bioRxiv· December 2025

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Nucleotide context models outperform protein language models for predicting antibody affinity maturation.
Mackenzie M Johnson, Kevin Sung, Hugh K Haddox, Ashni A Vora, Tatsuya Araki

bioRxiv· November 2025

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Separating selection from mutation in antibody language models.
Frederick A Matsen, Will Dumm, Kevin Sung, Mackenzie M Johnson, David Rich

bioRxiv· October 2025

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Thrifty wide-context models of B cell receptor somatic hypermutation.
Kevin Sung, Mackenzie M Johnson, Will Dumm, Noah Simon, Hugh Haddox

Elife· August 2025

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Tribbles 3 blunts exercise-induced skeletal muscle adaptation.
Ran Hee Choi, Abigail McConahay, Mackenzie B Johnson, Morgan Ojemuyiwa, Brooklyn J Phillips

bioRxiv· July 2025

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A Sitewise Model of Natural Selection on Individual Antibodies via a Transformer-Encoder.
Frederick A Matsen, Kevin Sung, Mackenzie M Johnson, Will Dumm, David Rich

Mol Biol Evol· July 2025

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Thrifty wide-context models of B cell receptor somatic hypermutation.
Kevin Sung, Mackenzie M Johnson, Will Dumm, Noah Simon, Hugh Haddox

bioRxiv· May 2025

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Articles That May Change Your Practice: Utilization of Non-Invasive Positive Pressure Ventilation in the Prehospital Setting.
Katherine Stuart, Mackenzie Johnson, Aaron J Lacy, James L Li

Air Med J· May 2025

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Empowering High Throughput Screening of 3D Models: Automated Dispensing of Cervical and Endometrial Cancer Cells.
Samantha Seymour, Ines Cadena, Mackenzie Johnson, Riya Thakkar, Molly Jenne

Cell Mol Bioeng· February 2025

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The battle of the sexes in humans is highly polygenic.
Jared M Cole, Carly B Scott, Mackenzie M Johnson, Peter R Golightly, Jedidiah Carlson

Proc Natl Acad Sci U S A· September 2024

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The Effects of Intra-Articular Triamcinolone and Autologous Protein Solution on Metabolic Parameters in Horses.
Allen E Page, Mackenzie Johnson, Jordan L Parker, Olivia Jacob, Rachel Poston

Animals (Basel)· August 2024

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Brodifacoum contamination of synthetic cannabinoid causing unexplained coagulopathy in multiple trauma: A case report.
Anthony V Thomas, Mackenzie L Johnson, Anna M Tincher, Saniya Zackariya, Hassaan Khan

Trauma Case Rep· June 2024

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The Effect of Inhaled Ciclesonide Treatment on Systemic Markers of Immune Function in Horses.
Allen E Page, Mackenzie Johnson, Jordan L Parker, Olivia Jacob, Melissa Swan

J Equine Vet Sci· November 2023

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Crofelemer for the Management of Neratinib-Associated Diarrhea in Patients With HER2+ Early-Stage Breast Cancer.
Saya Jacob, MacKenzie Johnson, Brianna Roque, Laura Quintal, Hope S Rugo

Clin Breast Cancer· October 2023

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Residual effects of intra-articular betamethasone and triamcinolone acetonide in an equine acute synovitis model.
Emma Partridge, Emma Adam, Courtney Wood, Jordan Parker, Mackenzie Johnson

Equine Vet J· September 2023

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Effects of High-Speed Training on Messenger RNA Expression in Two-Year-Old Thoroughbred Racehorses.
Mackenzie G Johnson, Emma Adam, Andrew Watt, Allen E Page

J Equine Vet Sci· September 2023

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Growth-dependent Gene Expression Variation Influences the Strength of Codon Usage Biases.
Mackenzie M Johnson, Adam J Hockenberry, Matthew J McGuffie, Luiz Carlos Vieira, Claus O Wilke

Mol Biol Evol· September 2023

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Growth-dependent gene expression variation influences the strength of codon usage biases.
Mackenzie M Johnson, Adam J Hockenberry, Matthew J McGuffie, Luiz Carlos Vieira, Claus O Wilke

bioRxiv· July 2023

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Development and Evaluation of a Muscle Atrophy Scoring System (MASS) for Horses.
Alisa C Herbst, Mackenzie G Johnson, Hayley Gammons, Stephanie E Reedy, Kristine L Urschel

J Equine Vet Sci· March 2022

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A computational exploration of resilience and evolvability of protein-protein interaction networks.
Brennan Klein, Ludvig Holmér, Keith M Smith, Mackenzie M Johnson, Anshuman Swain

Commun Biol· December 2021

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Site-Specific Amino Acid Distributions Follow a Universal Shape.
Mackenzie M Johnson, Claus O Wilke

J Mol Evol· December 2020

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Adipose tissue-specific knockout of AMPKα1/α2 results in normal AICAR tolerance and glucose metabolism.
Ran Hee Choi, Abigail McConahay, Mackenzie B Johnson, Ha-Won Jeong, Ho-Jin Koh

Biochem Biophys Res Commun· November 2019

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Multivariate profiling of African green monkey and rhesus macaque T lymphocytes.
Wail M Hassan, Gregory F Burton, Gabriella A Pinter, Istvan G Lauko, Nader N Mahdi, Mackenzie E Johnson

Sci Rep· March 2019

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Withdrawn as Duplicate: The many nuanced evolutionary consequences of duplicated genes.
Ashley I Teufel, Mackenzie M Johnson, Jon M Laurent, Aashiq H Kachroo, Edward M Marcotte

Mol Biol Evol· December 2018

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