Publications by authors named "Manolo Gouy"

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A divide-and-conquer phylogenomic approach based on character supermatrices resolves early steps in the evolution of the Archaea.
Monique Aouad, Jean-Pierre Flandrois, Frédéric Jauffrit, Manolo Gouy, Simonetta Gribaldo

BMC Ecol Evol· January 2022

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Resurrection of Ancestral Malate Dehydrogenases Reveals the Evolutionary History of Halobacterial Proteins: Deciphering Gene Trajectories and Changes in Biochemical Properties.
Samuel Blanquart, Mathieu Groussin, Aline Le Roy, Gergely J Szöllosi, Eric Girard, Manolo Gouy

Mol Biol Evol· August 2021

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The Molecular Determinants of Thermoadaptation: Methanococcales as a Case Study.
Michel Lecocq, Mathieu Groussin, Manolo Gouy, Céline Brochier-Armanet

Mol Biol Evol· May 2021

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Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation.
Manolo Gouy, Eric Tannier, Nicolas Comte, David P Parsons

Methods Mol Biol· April 2021

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Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.
Nicolas Comte, Benoit Morel, Damir Hasić, Laurent Guéguen, Bastien Boussau, Manolo Gouy

Bioinformatics· September 2020

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Extreme halophilic archaea derive from two distinct methanogen Class II lineages.
Monique Aouad, Najwa Taib, Anne Oudart, Michel Lecocq, Manolo Gouy

Mol Phylogenet Evol· October 2018

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RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics.
Frédéric Jauffrit, Simon Penel, Stéphane Delmotte, Carine Rey, Damien M de Vienne, Manolo Gouy

Mol Biol Evol· August 2016

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Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated.
Mathieu Groussin, Bastien Boussau, Gergely Szöllõsi, Laura Eme, Manolo Gouy

Mol Biol Evol· February 2016

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leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences.
Jean-Pierre Flandrois, Guy Perrière, Manolo Gouy

BMC Bioinformatics· August 2015

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Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees.
Mathieu Groussin, Joanne K Hobbs, Gergely J Szöllősi, Simonetta Gribaldo, Vickery L Arcus, Manolo Gouy

Mol Biol Evol· January 2015

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Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes.
Nicolas C Rochette, Céline Brochier-Armanet, Manolo Gouy

Mol Biol Evol· April 2014

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The molecular signal for the adaptation to cold temperature during early life on Earth.
Mathieu Groussin, Bastien Boussau, Sandrine Charles, Samuel Blanquart, Manolo Gouy

Biol Lett· October 2013

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Bio++: efficient extensible libraries and tools for computational molecular evolution.
Laurent Guéguen, Sylvain Gaillard, Bastien Boussau, Manolo Gouy, Mathieu Groussin

Mol Biol Evol· August 2013

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Genome-scale coestimation of species and gene trees.
Bastien Boussau, Gergely J Szöllosi, Laurent Duret, Manolo Gouy, Eric Tannier

Genome Res· February 2013

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Lateral gene transfer as a support for the tree of life.
Sophie S Abby, Eric Tannier, Manolo Gouy, Vincent Daubin

Proc Natl Acad Sci U S A· March 2012

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Adaptation to environmental temperature is a major determinant of molecular evolutionary rates in archaea.
Mathieu Groussin, Manolo Gouy

Mol Biol Evol· September 2011

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Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests.
Sophie S Abby, Eric Tannier, Manolo Gouy, Vincent Daubin

BMC Bioinformatics· June 2010

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SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building.
Manolo Gouy, Stéphane Guindon, Olivier Gascuel

Mol Biol Evol· February 2010

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Databases of homologous gene families for comparative genomics.
Simon Penel, Anne-Muriel Arigon, Jean-François Dufayard, Anne-Sophie Sertier, Vincent Daubin, Manolo Gouy

BMC Bioinformatics· June 2009

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A mixture model and a hidden markov model to simultaneously detect recombination breakpoints and reconstruct phylogenies.
Bastien Boussau, Laurent Guéguen, Manolo Gouy

Evol Bioinform Online· June 2009

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Parallel adaptations to high temperatures in the Archaean eon.
Bastien Boussau, Samuel Blanquart, Anamaria Necsulea, Nicolas Lartillot, Manolo Gouy

Nature· December 2008

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Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria.
Bastien Boussau, Laurent Guéguen, Manolo Gouy

BMC Evol Biol· October 2008

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Polymorphism of the Staphylococcus aureus Panton-Valentine leukocidin genes and its possible link with the fitness of community-associated methicillin-resistant S. aureus.
Oana Dumitrescu, Anne Tristan, Hélène Meugnier, Michèle Bes, Manolo Gouy

J Infect Dis· September 2008

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Automatic identification of large collections of protein-coding or rRNA sequences.
Anne-Muriel Arigon, Guy Perrière, Manolo Gouy

Biochimie· April 2008

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Evolutionary biology: ancient bacteria liked it hot.
Manolo Gouy, Marc Chaussidon

Nature· February 2008

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