Publications by authors named "Samuel Blanquart"

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A duo of fungi and complex and dynamic bacterial community networks contribute to shape the Ascophyllum nodosum holobiont.
Coralie Rousseau, Gwenn Tanguy, Erwan Legeay, Samuel Blanquart, Arnaud Belcour

Environ Microbiome· December 2025

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FUSE-PhyloTree: linking functions and sequence conservation modules of a protein family through phylogenomic analysis.
Olivier Dennler, Elisa Chenel, François Coste, Samuel Blanquart, Catherine Belleannée

Bioinformatics· September 2025

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SPARTA: Interpretable functional classification of microbiomes and detection of hidden cumulative effects.
Baptiste Ruiz, Arnaud Belcour, Samuel Blanquart, Sylvie Buffet-Bataillon, Isabelle Le Huërou-Luron

PLoS Comput Biol· November 2024

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Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems.
France Denoeud, Olivier Godfroy, Corinne Cruaud, Svenja Heesch, Zofia Nehr, Samuel Blanquart

Cell· November 2024

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Empirical evidence for metabolic drift in plant and algal lipid biosynthesis pathways.
Maëlle Zonnequin, Arnaud Belcour, Ludovic Delage, Anne Siegel, Samuel Blanquart

Front Plant Sci· January 2024

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Phylogenetic inference of the emergence of sequence modules and protein-protein interactions in the ADAMTS-TSL family.
Olivier Dennler, François Coste, Samuel Blanquart, Catherine Belleannée, Nathalie Théret

PLoS Comput Biol· August 2023

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Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe.
Arnaud Belcour, Jeanne Got, Méziane Aite, Ludovic Delage, Jonas Collén, Samuel Blanquart

Genome Res· July 2023

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Identifying genes with conserved splicing structure and orthologous isoforms in human, mouse and dog.
Nicolas Guillaudeux, Catherine Belleannée, Samuel Blanquart

BMC Genomics· March 2022

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Resurrection of Ancestral Malate Dehydrogenases Reveals the Evolutionary History of Halobacterial Proteins: Deciphering Gene Trajectories and Changes in Biochemical Properties.
Samuel Blanquart, Mathieu Groussin, Aline Le Roy, Gergely J Szöllosi, Eric Girard

Mol Biol Evol· August 2021

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Evolution of the human cold/menthol receptor, TRPM8.
Samuel Blanquart, Anne-Sophie Borowiec, Philippe Delcourt, Martin Figeac, Christopher A Emerling

Mol Phylogenet Evol· July 2019

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Sequence selection by FitSS4ASR alleviates ancestral sequence reconstruction as exemplified for geranylgeranylglyceryl phosphate synthase.
Kristina Straub, Mona Linde, Cosimo Kropp, Samuel Blanquart, Patrick Babinger

Biol Chem· February 2019

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MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes.
Pierre Pericard, Yoann Dufresne, Loïc Couderc, Samuel Blanquart, Hélène Touzet

Bioinformatics· February 2018

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Assisted transcriptome reconstruction and splicing orthology.
Samuel Blanquart, Jean-Stéphane Varré, Paul Guertin, Amandine Perrin, Anne Bergeron

BMC Genomics· November 2016

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ProCARs: Progressive Reconstruction of Ancestral Gene Orders.
Amandine Perrin, Jean-Stéphane Varré, Samuel Blanquart, Aïda Ouangraoua

BMC Genomics· March 2016

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Evidence for the existence of elaborate enzyme complexes in the Paleoarchean era.
Bernd Reisinger, Josef Sperl, Alexandra Holinski, Veronika Schmid, Chitra Rajendran, Samuel Blanquart

J Am Chem Soc· January 2014

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The molecular signal for the adaptation to cold temperature during early life on Earth.
Mathieu Groussin, Bastien Boussau, Sandrine Charles, Samuel Blanquart, Manolo Gouy

Biol Lett· October 2013

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Mitochondrial genes support a common origin of rodent malaria parasites and Plasmodium falciparum's relatives infecting great apes.
Samuel Blanquart, Olivier Gascuel

BMC Evol Biol· March 2011

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Computational and experimental evidence for the evolution of a (beta alpha)8-barrel protein from an ancestral quarter-barrel stabilised by disulfide bonds.
Markus Richter, Manal Bosnali, Linn Carstensen, Tobias Seitz, Helmut Durchschlag, Samuel Blanquart

J Mol Biol· May 2010

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Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny.
Tiratha Raj Singh, Georgia Tsagkogeorga, Frédéric Delsuc, Samuel Blanquart, Noa Shenkar

BMC Genomics· November 2009

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PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating.
Nicolas Lartillot, Thomas Lepage, Samuel Blanquart

Bioinformatics· September 2009

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Parallel adaptations to high temperatures in the Archaean eon.
Bastien Boussau, Samuel Blanquart, Anamaria Necsulea, Nicolas Lartillot, Manolo Gouy

Nature· December 2008

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A site- and time-heterogeneous model of amino acid replacement.
Samuel Blanquart, Nicolas Lartillot

Mol Biol Evol· May 2008

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Translational machinery of the chaetognath Spadella cephaloptera: a transcriptomic approach to the analysis of cytosolic ribosomal protein genes and their expression.
Roxane M Barthélémy, Anne Chenuil, Samuel Blanquart, Jean-Paul Casanova, Eric Faure

BMC Evol Biol· August 2007

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A Bayesian compound stochastic process for modeling nonstationary and nonhomogeneous sequence evolution.
Samuel Blanquart, Nicolas Lartillot

Mol Biol Evol· November 2006

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