Publications by authors named "Marc Rehmsmeier"

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Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3.
Bjørn André Bredesen-Aa, Marc Rehmsmeier

PLoS One· September 2022

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Correction: MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts.
Andrea Hita, Gilles Brocart, Ana Fernandez, Marc Rehmsmeier, Anna Alemany

BMC Bioinformatics· June 2022

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MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts.
Andrea Hita, Gilles Brocart, Ana Fernandez, Marc Rehmsmeier, Anna Alemany

BMC Bioinformatics· January 2022

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MOCCA: a flexible suite for modelling DNA sequence motif occurrence combinatorics.
Bjørn André Bredesen, Marc Rehmsmeier

BMC Bioinformatics· May 2021

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DNA sequence models of genome-wide Drosophila melanogaster Polycomb binding sites improve generalization to independent Polycomb Response Elements.
Bjørn André Bredesen, Marc Rehmsmeier

Nucleic Acids Res· September 2019

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Precrec: fast and accurate precision-recall and ROC curve calculations in R.
Takaya Saito, Marc Rehmsmeier

Bioinformatics· January 2017

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Comprehensive analysis of high-throughput screens with HiTSeekR.
Markus List, Steffen Schmidt, Helle Christiansen, Marc Rehmsmeier, Qihua Tan

Nucleic Acids Res· August 2016

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Robust de novo pathway enrichment with KeyPathwayMiner 5.
Nicolas Alcaraz, Markus List, Martin Dissing-Hansen, Marc Rehmsmeier, Qihua Tan

F1000Res· August 2016

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The precision-recall plot is more informative than the ROC plot when evaluating binary classifiers on imbalanced datasets.
Takaya Saito, Marc Rehmsmeier

PLoS One· November 2015

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A computational approach to developing mathematical models of polyploid meiosis.
Marc Rehmsmeier

Genetics· April 2013

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Response to Wang and Luo.
Marc Rehmsmeier

BMC Biol· April 2012

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High-resolution analysis of parent-of-origin allelic expression in the Arabidopsis Endosperm.
Philip Wolff, Isabelle Weinhofer, Jonathan Seguin, Pawel Roszak, Christian Beisel, Marc Rehmsmeier

PLoS Genet· June 2011

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Polyploidization increases meiotic recombination frequency in Arabidopsis.
Ales Pecinka, Wei Fang, Marc Rehmsmeier, Avraham A Levy, Ortrun Mittelsten Scheid

BMC Biol· April 2011

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Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana.
Leonardo Alves, Sandra Niemeier, Arne Hauenschild, Marc Rehmsmeier, Thomas Merkle

Nucleic Acids Res· July 2009

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A functional screen implicates microRNA-138-dependent regulation of the depalmitoylation enzyme APT1 in dendritic spine morphogenesis.
Gabriele Siegel, Gregor Obernosterer, Roberto Fiore, Martin Oehmen, Silvia Bicker, Marc Rehmsmeier

Nat Cell Biol· June 2009

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mkESA: enhanced suffix array construction tool.
Robert Homann, David Fleer, Robert Giegerich, Marc Rehmsmeier

Bioinformatics· April 2009

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Evolutionary plasticity of polycomb/trithorax response elements in Drosophila species.
Arne Hauenschild, Leonie Ringrose, Christina Altmutter, Renato Paro, Marc Rehmsmeier

PLoS Biol· October 2008

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Prediction of microRNA targets.
Marc Rehmsmeier

Methods Mol Biol· September 2006

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RNAhybrid: microRNA target prediction easy, fast and flexible.
Jan Krüger, Marc Rehmsmeier

Nucleic Acids Res· July 2006

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jPREdictor: a versatile tool for the prediction of cis-regulatory elements.
Thomas Fiedler, Marc Rehmsmeier

Nucleic Acids Res· July 2006

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Beyond Mfold: recent advances in RNA bioinformatics.
Jens Reeder, Matthias Höchsmann, Marc Rehmsmeier, Björn Voss, Robert Giegerich

J Biotechnol· June 2006

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RNAshapes: an integrated RNA analysis package based on abstract shapes.
Peter Steffen, Björn Voss, Marc Rehmsmeier, Jens Reeder, Robert Giegerich

Bioinformatics· February 2006

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Complete probabilistic analysis of RNA shapes.
Björn Voss, Robert Giegerich, Marc Rehmsmeier

BMC Biol· February 2006

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Fast and effective prediction of microRNA/target duplexes.
Marc Rehmsmeier, Peter Steffen, Matthias Hochsmann, Robert Giegerich

RNA· October 2004

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Abstract shapes of RNA.
Robert Giegerich, Björn Voss, Marc Rehmsmeier

Nucleic Acids Res· September 2004

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