Publications by authors named "Maria Nueda"

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scMaSigPro: Differential Expression Analysis along Single-Cell Trajectories.
Priyansh Srivastava, Marta Benegas Coll, Stefan Götz, María José Nueda, Ana Conesa

Bioinformatics· July 2024

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RND3 Potentiates Proinflammatory Activation through NOTCH Signaling in Activated Macrophages.
María José Romero de Ávila, Susana López-López, Aarón García-Blázquez, Almudena Ruiz-García, María Julia González-Gómez, María Luisa Nueda

J Immunol Res· February 2024

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Transfer Learning in Multiple Hypothesis Testing.
Stefano Cabras, María Eugenia Castellanos Nueda

Entropy (Basel)· January 2024

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NOTCH4 potentiates the IL-13 induced genetic program in M2 alternative macrophages through the AP1 and IRF4-JMJD3 axis.
Susana López-López, María José Romero de Ávila, María Julia González-Gómez, María Luisa Nueda, Victoriano Baladrón

Int Immunol· October 2023

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LPDA: A new classification method based on linear programming.
María J Nueda, Carmen Gandía, Mariola D Molina

PLoS One· July 2022

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MultiBaC: an R package to remove batch effects in multi-omic experiments.
Manuel Ugidos, María José Nueda, José M Prats-Montalbán, Alberto Ferrer, Ana Conesa

Bioinformatics· April 2022

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NOTCH4 Exhibits Anti-Inflammatory Activity in Activated Macrophages by Interfering With Interferon-γ and TLR4 Signaling.
Susana López-López, María José Romero de Ávila, Natalia Carolina Hernández de León, Francisco Ruiz-Marcos, Victoriano Baladrón, María Luisa Nueda

Front Immunol· February 2022

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Chitosan modulates Pochonia chlamydosporia gene expression during nematode egg parasitism.
Marta Suarez-Fernandez, Christine Sambles, Federico Lopez-Moya, María J Nueda, David J Studholme

Environ Microbiol· September 2021

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Chitosan Induces Plant Hormones and Defenses in Tomato Root Exudates.
Marta Suarez-Fernandez, Frutos Carlos Marhuenda-Egea, Federico Lopez-Moya, Marino B Arnao, Francisca Cabrera-Escribano, Maria Jose Nueda

Front Plant Sci· November 2020

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NOTCH3 signaling is essential for NF-κB activation in TLR-activated macrophages.
Susana López-López, Eva María Monsalve, María José Romero de Ávila, Julia González-Gómez, Natalia Hernández de León, María Luisa Nueda

Sci Rep· September 2020

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Functionalized CdSe/ZnS Quantum Dots for Intracellular pH Measurements by Fluorescence Lifetime Imaging Microscopy.
Pedro J Pacheco-Liñán, Iván Bravo, María L Nueda, José Albaladejo, Andrés Garzón-Ruiz

ACS Sens· July 2020

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Identification and visualization of differential isoform expression in RNA-seq time series.
María José Nueda, Jordi Martorell-Marugan, Cristina Martí, Sonia Tarazona, Ana Conesa

Bioinformatics· February 2018

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Neurospora crassa transcriptomics reveals oxidative stress and plasma membrane homeostasis biology genes as key targets in response to chitosan.
Federico Lopez-Moya, David Kowbel, Maria José Nueda, Javier Palma-Guerrero, N Louise Glass

Mol Biosyst· February 2016

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Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package.
Sonia Tarazona, Pedro Furió-Tarí, David Turrà, Antonio Di Pietro, María José Nueda

Nucleic Acids Res· December 2015

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Pathway network inference from gene expression data.
Ignacio Ponzoni, María Nueda, Sonia Tarazona, Stefan Götz, David Montaner

BMC Syst Biol· March 2015

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Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series.
María José Nueda, Sonia Tarazona, Ana Conesa

Bioinformatics· September 2014

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ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments.
Maria J Nueda, Alberto Ferrer, Ana Conesa

Biostatistics· July 2012

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The EGF-like proteins DLK1 and DLK2 function as inhibitory non-canonical ligands of NOTCH1 receptor that modulate each other's activities.
Beatriz Sánchez-Solana, María Luisa Nueda, María Desamparados Ruvira, María José Ruiz-Hidalgo, Eva María Monsalve

Biochim Biophys Acta· June 2011

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Serial Expression Analysis: a web tool for the analysis of serial gene expression data.
Maria José Nueda, José Carbonell, Ignacio Medina, Joaquín Dopazo, Ana Conesa

Nucleic Acids Res· July 2010

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Functional assessment of time course microarray data.
María José Nueda, Patricia Sebastián, Sonia Tarazona, Francisco García-García, Joaquín Dopazo

BMC Bioinformatics· June 2009

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High-throughput functional annotation and data mining with the Blast2GO suite.
Stefan Götz, Juan Miguel García-Gómez, Javier Terol, Tim D Williams, Shivashankar H Nagaraj, María José Nueda

Nucleic Acids Res· June 2008

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Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA.
María José Nueda, Ana Conesa, Johan A Westerhuis, Huub C J Hoefsloot, Age K Smilde

Bioinformatics· July 2007

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maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments.
Ana Conesa, María José Nueda, Alberto Ferrer, Manuel Talón

Bioinformatics· May 2006

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dlk acts as a negative regulator of Notch1 activation through interactions with specific EGF-like repeats.
Victoriano Baladrón, María José Ruiz-Hidalgo, María Luisa Nueda, María José M Díaz-Guerra, José Javier García-Ramírez

Exp Cell Res· February 2005

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