Publications by authors named "Mark Bieda"

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Tucatinib and trastuzumab in HER2-mutated metastatic breast cancer: a phase 2 basket trial.
Alicia F C Okines, Giuseppe Curigliano, Nobumasa Mizuno, Do-Youn Oh, Andree Rorive, Mark Bieda

Nat Med· March 2025

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An inhaled dose of budesonide induces genes involved in transcription and signaling in the human airways: enhancement of anti- and proinflammatory effector genes.
Richard Leigh, Mahmoud M Mostafa, Elizabeth M King, Christopher F Rider, Suharsh Shah, Mark Bieda

Pharmacol Res Perspect· August 2016

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Reusable, extensible, and modifiable R scripts and Kepler workflows for comprehensive single set ChIP-seq analysis.
Nathan Cormier, Tyler Kolisnik, Mark Bieda

BMC Bioinformatics· July 2016

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Differences among brain tumor stem cell types and fetal neural stem cells in focal regions of histone modifications and DNA methylation, broad regions of modifications, and bivalent promoters.
Sally Yoo, Mark C Bieda

BMC Genomics· August 2014

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Mutation in folate metabolism causes epigenetic instability and transgenerational effects on development.
Nisha Padmanabhan, Dongxin Jia, Colleen Geary-Joo, Xuchu Wu, Anne C Ferguson-Smith, Mark C Bieda

Cell· September 2013

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Workflows for microarray data processing in the Kepler environment.
Thomas Stropp, Timothy McPhillips, Bertram Ludäscher, Mark Bieda

BMC Bioinformatics· May 2012

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Anesthetics discriminate between tonic and phasic gamma-aminobutyric acid receptors on hippocampal CA1 neurons.
Mark C Bieda, Henry Su, M Bruce Maciver

Anesth Analg· February 2009

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Analysis of the mechanisms mediating tumor-specific changes in gene expression in human liver tumors.
Luis G Acevedo, Mark Bieda, Roland Green, Peggy J Farnham

Cancer Res· April 2008

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Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.
David S Johnson, Wei Li, D Benjamin Gordon, Arindam Bhattacharjee, Bo Curry, Mark Bieda

Genome Res· March 2008

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Integrated epigenomic analyses of neuronal MeCP2 reveal a role for long-range interaction with active genes.
Dag H Yasui, Sailaja Peddada, Mark C Bieda, Roxanne O Vallero, Amber Hogart

Proc Natl Acad Sci U S A· December 2007

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A comprehensive ChIP-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members.
Xiaoqin Xu, Mark Bieda, Victor X Jin, Alina Rabinovich, Mathew J Oberley

Genome Res· November 2007

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Nature· June 2007

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Identification of genes directly regulated by the oncogene ZNF217 using chromatin immunoprecipitation (ChIP)-chip assays.
Sheryl R Krig, Victor X Jin, Mark C Bieda, Henriette O'Geen, Paul Yaswen

J Biol Chem· March 2007

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Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome.
Mark Bieda, Xiaoqin Xu, Michael A Singer, Roland Green, Peggy J Farnham

Genome Res· May 2006

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N-type and L-type calcium channels mediate glycinergic synaptic inputs to retinal ganglion cells of tiger salamanders.
Mark C Bieda, David R Copenhagen

Vis Neurosci· February 2005

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Major role for tonic GABAA conductances in anesthetic suppression of intrinsic neuronal excitability.
Mark C Bieda, M Bruce MacIver

J Neurophysiol· September 2004

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