Publications by authors named "Tyler Kolisnik"

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pyRforest: a comprehensive R package for genomic data analysis featuring scikit-learn Random Forests in R.
Tyler Kolisnik, Faeze Keshavarz-Rahaghi, Rachel V Purcell, Adam N H Smith, Olin K Silander

Brief Funct Genomics· January 2025

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Identifying important microbial and genomic biomarkers for differentiating right- versus left-sided colorectal cancer using random forest models.
Tyler Kolisnik, Arielle Kae Sulit, Sebastian Schmeier, Frank Frizelle, Rachel Purcell

BMC Cancer· July 2023

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MetaFunc: taxonomic and functional analyses of high throughput sequencing for microbiomes.
Arielle Kae Sulit, Tyler Kolisnik, Frank Antony Frizelle, Rachel Purcell, Sebastian Schmeier

Gut Microbiome (Camb)· January 2023

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A p53 transcriptional signature in primary and metastatic cancers derived using machine learning.
Faeze Keshavarz-Rahaghi, Erin Pleasance, Tyler Kolisnik, Steven J M Jones

Front Genet· August 2022

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The Diverse Genomic Landscape of Clinically Low-risk Prostate Cancer.
Matthew R Cooperberg, Nicholas Erho, June M Chan, Felix Y Feng, Nick Fishbane, Tyler Kolisnik

Eur Urol· October 2018

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Development and Validation of a Novel Integrated Clinical-Genomic Risk Group Classification for Localized Prostate Cancer.
Daniel E Spratt, Jingbin Zhang, María Santiago-Jiménez, Robert T Dess, John W Davis, Tyler Kolisnik

J Clin Oncol· February 2018

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Ability of a Genomic Classifier to Predict Metastasis and Prostate Cancer-specific Mortality after Radiation or Surgery based on Needle Biopsy Specimens.
Paul L Nguyen, Zaid Haddad, Ashley E Ross, Neil E Martin, Samineh Deheshi, Tyler Kolisnik

Eur Urol· November 2017

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Low PCA3 expression is a marker of poor differentiation in localized prostate tumors: exploratory analysis from 12,076 patients.
Mohammed Alshalalfa, Gerald W Verhaegh, Ewan A Gibb, Maria Santiago-Jiménez, Nicholas Erho, Tyler Kolisnik

Oncotarget· August 2017

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An inhaled dose of budesonide induces genes involved in transcription and signaling in the human airways: enhancement of anti- and proinflammatory effector genes.
Richard Leigh, Mahmoud M Mostafa, Elizabeth M King, Christopher F Rider, Suharsh Shah, Tyler Kolisnik

Pharmacol Res Perspect· August 2016

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Reusable, extensible, and modifiable R scripts and Kepler workflows for comprehensive single set ChIP-seq analysis.
Nathan Cormier, Tyler Kolisnik, Mark Bieda

BMC Bioinformatics· July 2016

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