Publications by authors named "Mark Chernyshev"

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Detection of PCR chimeras in adaptive immune receptor repertoire sequences.
Mark Chernyshev, Aron Stålmarck, Martin Corcoran, Gunilla B Karlsson Hedestam, Ben Murrell

Bioinformatics· November 2025

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Isolation of genetically diverse influenza antibodies highlights the role of IG germline gene variation and informs the design of population-comprehensive vaccine strategies.
Alexandra A Fischer, Martin Corcoran, Philip J M Brouwer, Mark Chernyshev, Rebecca A Gillespie

bioRxiv· July 2025

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Vaccination of nonhuman primates elicits a broadly neutralizing antibody lineage targeting a quaternary epitope on the HIV-1 Env trimer.
Fabian-Alexander Schleich, Shridhar Bale, Javier Guenaga, Gabriel Ozorowski, Monika Àdori, Mark Chernyshev

Immunity· June 2025

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Detection of PCR chimeras in adaptive immune receptor repertoire sequencing using hidden Markov models.
Mark Chernyshev, Aron Stålmarck, Martin Corcoran, Gunilla B Karlsson Hedestam, Ben Murrell

bioRxiv· February 2025

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Multi-compartmental diversification of neutralizing antibody lineages dissected in SARS-CoV-2 spike-immunized macaques.
Marco Mandolesi, Hrishikesh Das, Liset de Vries, Yiqiu Yang, Changil Kim, Mark Chernyshev

Nat Commun· July 2024

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Adaptive immune receptor genotyping using the program.
Sanjana Narang, Mateusz Kaduk, Mark Chernyshev, Gunilla B Karlsson Hedestam, Martin M Corcoran

Front Immunol· May 2023

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Vaccination of SARS-CoV-2-infected individuals expands a broad range of clonally diverse affinity-matured B cell lineages.
Mark Chernyshev, Mrunal Sakharkar, Ruth I Connor, Haley L Dugan, Daniel J Sheward

Nat Commun· April 2023

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Archaic humans have contributed to large-scale variation in modern human T cell receptor genes.
Martin Corcoran, Mark Chernyshev, Marco Mandolesi, Sanjana Narang, Mateusz Kaduk

Immunity· March 2023

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Immunoglobulin germline gene polymorphisms influence the function of SARS-CoV-2 neutralizing antibodies.
Pradeepa Pushparaj, Andrea Nicoletto, Daniel J Sheward, Hrishikesh Das, Xaquin Castro Dopico, Mark Chernyshev

Immunity· January 2023

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VDJ Gene Usage in IgM Repertoires of Rhesus and Cynomolgus Macaques.
Mark Chernyshev, Mateusz Kaduk, Martin Corcoran, Gunilla B Karlsson Hedestam

Front Immunol· March 2022

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GPR43 regulates marginal zone B-cell responses to foreign and endogenous antigens.
Leona Rohrbeck, Monika Adori, Shan Wang, Chenfei He, Christopher A Tibbitt, Mark Chernyshev

Immunol Cell Biol· February 2021

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Long-read amplicon denoising.
Venkatesh Kumar, Thomas Vollbrecht, Mark Chernyshev, Sanjay Mohan, Brian Hanst

Nucleic Acids Res· October 2019

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