Publications by authors named "Mark D Andrake"

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YAP1 and QSER1 are Key Modulators of Embryonic Signaling Pathways in the Mammalian Epiblast.
Elizabeth Abraham, Thomas Roule, Aidan Douglas, Emily Megill, Olivia M Pericak, Mark D Andrake

bioRxiv· June 2025

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A retinoic acid:YAP1 signaling axis controls atrial lineage commitment.
Elizabeth Abraham, Aleksandra Kostina, Brett Volmert, Thomas Roule, Ling Huang, Mark D Andrake

Cell Rep· May 2025

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Necroptosis blockade prevents lung injury in severe influenza.
Avishekh Gautam, David F Boyd, Sameer Nikhar, Ting Zhang, Ioannis Siokas, Mark D Andrake

Nature· April 2024

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Correction: Candidate variants in DNA replication and repair genes in early-onset renal cell carcinoma patients referred for germline testing.
Elena V Demidova, Ilya G Serebriiskii, Ramilia Vlasenkova, Simon Kelow, Mark D Andrake

BMC Genomics· July 2023

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Candidate variants in DNA replication and repair genes in early-onset renal cell carcinoma patients referred for germline testing.
Elena V Demidova, Ilya G Serebriiskii, Ramilia Vlasenkova, Simon Kelow, Mark D Andrake

BMC Genomics· April 2023

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Protein modeling to assess the pathogenicity of rare variants of SERPINA1 in patients suspected of having Alpha 1 Antitrypsin Deficiency.
Friedrich Kueppers, Mark D Andrake, Qifang Xu, Roland L Dunbrack, Joannah Kim

BMC Med Genet· July 2019

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Mouse modeling and structural analysis of the p.G307S mutation in human cystathionine β-synthase () reveal effects on CBS activity but not stability.
Sapna Gupta, Simon Kelow, Liqun Wang, Mark D Andrake, Roland L Dunbrack

J Biol Chem· September 2018

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The conformational feasibility for the formation of reaching dimer in ASV and HIV integrase: a molecular dynamics study.
Sangeetha Balasubramanian, Muthukumaran Rajagopalan, Ravi Shankar Bojja, Anna Marie Skalka, Mark D Andrake

J Biomol Struct Dyn· December 2017

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Successes and challenges with retroviral enzymes.
Anna Marie Skalka, Mark D Andrake, Richard A Katz

Postepy Biochem· December 2017

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Biological function derived from predicted structures in CASP11.
Peter J Huwe, Qifang Xu, Maxim V Shapovalov, Vivek Modi, Mark D Andrake

Proteins· September 2016

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Distinct Orai-coupling domains in STIM1 and STIM2 define the Orai-activating site.
Xizhuo Wang, Youjun Wang, Yandong Zhou, Eunan Hendron, Salvatore Mancarella, Mark D Andrake

Nat Commun· March 2016

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Defects in DNA Repair Genes Predict Response to Neoadjuvant Cisplatin-based Chemotherapy in Muscle-invasive Bladder Cancer.
Elizabeth R Plimack, Roland L Dunbrack, Timothy A Brennan, Mark D Andrake, Yan Zhou

Eur Urol· December 2015

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Genetic Variants That Predispose to DNA Double-Strand Breaks in Lymphocytes From a Subset of Patients With Familial Colorectal Carcinomas.
Sanjeevani Arora, Hong Yan, Iltaeg Cho, Hua-Ying Fan, Biao Luo, Mark D Andrake

Gastroenterology· December 2015

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Systematic evaluation of underlying defects in DNA repair as an approach to case-only assessment of familial prostate cancer.
Emmanuelle Nicolas, Sanjeevani Arora, Yan Zhou, Ilya G Serebriiskii, Mark D Andrake

Oncotarget· November 2015

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Retroviral Integrase: Then and Now.
Mark D Andrake, Anna Marie Skalka

Annu Rev Virol· November 2015

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Genome-wide siRNA screen reveals a new cellular partner of NK cell receptor KIR2DL4: heparan sulfate directly modulates KIR2DL4-mediated responses.
Michael Brusilovsky, Moti Cordoba, Benyamin Rosental, Oren Hershkovitz, Mark D Andrake

J Immunol· November 2013

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The human protein PRR14 tethers heterochromatin to the nuclear lamina during interphase and mitotic exit.
Andrey Poleshko, Katelyn M Mansfield, Caroline C Burlingame, Mark D Andrake, Neil R Shah

Cell Rep· October 2013

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A modified HSP70 inhibitor shows broad activity as an anticancer agent.
Gregor M Balaburski, Julia I-Ju Leu, Neil Beeharry, Seth Hayik, Mark D Andrake

Mol Cancer Res· March 2013

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Architecture and assembly of HIV integrase multimers in the absence of DNA substrates.
Ravi Shankar Bojja, Mark D Andrake, George Merkel, Steven Weigand, Roland L Dunbrack

J Biol Chem· March 2013

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Retroviral integrases promote fraying of viral DNA ends.
Richard A Katz, George Merkel, Mark D Andrake, Heinrich Roder, Anna Marie Skalka

J Biol Chem· July 2011

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Architecture of a full-length retroviral integrase monomer and dimer, revealed by small angle X-ray scattering and chemical cross-linking.
Ravi S Bojja, Mark D Andrake, Steven Weigand, George Merkel, Olya Yarychkivska

J Biol Chem· May 2011

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Comparison of metal-dependent catalysis by HIV-1 and ASV integrase proteins using a new and rapid, moderate throughput assay for joining activity in solution.
Mark D Andrake, Joseph Ramcharan, George Merkel, Xue Zhi Zhao, Terrence R Burke

AIDS Res Ther· June 2009

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Oligonucleotide-based assays for integrase activity.
George Merkel, Mark D Andrake, Joseph Ramcharan, Anna Marie Skalka

Methods· April 2009

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Nuclear import of Avian Sarcoma Virus integrase is facilitated by host cell factors.
Mark D Andrake, Monica M Sauter, Kim Boland, Andrew D Goldstein, Maryem Hussein

Retrovirology· August 2008

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Mode of inhibition of HIV-1 Integrase by a C-terminal domain-specific monoclonal antibody.
Joseph Ramcharan, Diana M Colleluori, George Merkel, Mark D Andrake, Anna Marie Skalka

Retrovirology· June 2006

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