Publications by authors named "Mark Knuth"

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A novel interleukin-10 antibody graft to treat inflammatory bowel disease.
Michael DiDonato, Carolina Turk Simpson, Todd Vo, Mark Knuth, Bernhard Geierstanger

Structure· March 2025

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Structures of single-layer β-sheet proteins evolved from β-hairpin repeats.
Qingping Xu, Matthew Biancalana, Joanna C Grant, Hsiu-Ju Chiu, Lukasz Jaroszewski, Mark W Knuth

Protein Sci· September 2019

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Precise oligonucleotide-directed mutagenesis of the Chlamydomonas reinhardtii genome.
Wen-Zhi Jiang, Sarah Dumm, Mark E Knuth, Steven L Sanders, Donald P Weeks

Plant Cell Rep· June 2017

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A Distinct Type of Pilus from the Human Microbiome.
Qingping Xu, Mikio Shoji, Satoshi Shibata, Mariko Naito, Keiko Sato, Mark W Knuth

Cell· April 2016

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Insights into Substrate Specificity of NlpC/P60 Cell Wall Hydrolases Containing Bacterial SH3 Domains.
Qingping Xu, Dominique Mengin-Lecreulx, Xueqian W Liu, Delphine Patin, Carol L Farr, Mark W Knuth

mBio· September 2015

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Structure-guided functional characterization of DUF1460 reveals a highly specific NlpC/P60 amidase family.
Qingping Xu, Dominique Mengin-Lecreulx, Delphine Patin, Joanna C Grant, Hsiu-Ju Chiu, Mark W Knuth

Structure· December 2014

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Structural analysis of arabinose-5-phosphate isomerase from Bacteroides fragilis and functional implications.
Hsiu Ju Chiu, Joanna C Grant, Carol L Farr, Lukasz Jaroszewski, Mark W Knuth

Acta Crystallogr D Biol Crystallogr· October 2014

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Molecular characterization of novel pyridoxal-5'-phosphate-dependent enzymes from the human microbiome.
Nicholas M Fleischman, Debanu Das, Abhinav Kumar, Qingping Xu, Hsiu-Ju Chiu, Mark W Knuth

Protein Sci· August 2014

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Crystal structure of a putative quorum sensing-regulated protein (PA3611) from the Pseudomonas-specific DUF4146 family.
Debanu Das, Hsiu-Ju Chiu, Carol L Farr, Joanna C Grant, Lukasz Jaroszewski, Mark W Knuth

Proteins· June 2014

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Crystal structure of a member of a novel family of dioxygenases (PF10014) reveals a conserved cupin fold and active site.
Qingping Xu, Joanna Grant, Hsiu-Ju Chiu, Carol L Farr, Lukasz Jaroszewski, Mark W Knuth

Proteins· January 2014

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Structures of a bifunctional cell wall hydrolase CwlT containing a novel bacterial lysozyme and an NlpC/P60 DL-endopeptidase.
Qingping Xu, Hsiu-Ju Chiu, Carol L Farr, Lukasz Jaroszewski, Mark W Knuth

J Mol Biol· January 2014

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Structure and function of a novel LD-carboxypeptidase a involved in peptidoglycan recycling.
Debanu Das, Mireille Hervé, Marc-André Elsliger, Rameshwar U Kadam, Joanna C Grant, Mark W Knuth

J Bacteriol· December 2013

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Structure and function of the DUF2233 domain in bacteria and in the human mannose 6-phosphate uncovering enzyme.
Debanu Das, Wang-Sik Lee, Joanna C Grant, Hsiu-Ju Chiu, Carol L Farr, Mark W Knuth

J Biol Chem· June 2013

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Structure of an MmyB-like regulator from C. aurantiacus, member of a new transcription factor family linked to antibiotic metabolism in actinomycetes.
Qingping Xu, Gilles P van Wezel, Hsiu-Ju Chiu, Lukasz Jaroszewski, Heath E Klock, Mark W Knuth

PLoS One· November 2012

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The structure of Mlc titration factor A (MtfA/YeeI) reveals a prototypical zinc metallopeptidase related to anthrax lethal factor.
Qingping Xu, Anna-Katharina Göhler, Anne Kosfeld, Dennis Carlton, Hsiu-Ju Chiu, Mark W Knuth

J Bacteriol· June 2012

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Structure of the pilus assembly protein TadZ from Eubacterium rectale: implications for polar localization.
Qingping Xu, Beat Christen, Hsiu-Ju Chiu, Lukasz Jaroszewski, Heath E Klock, Mark W Knuth

Mol Microbiol· February 2012

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Structural and sequence analysis of imelysin-like proteins implicated in bacterial iron uptake.
Qingping Xu, Neil D Rawlings, Carol L Farr, Hsiu-Ju Chiu, Joanna C Grant, Mark W Knuth

PLoS One· December 2011

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Structural analysis of papain-like NlpC/P60 superfamily enzymes with a circularly permuted topology reveals potential lipid binding sites.
Qingping Xu, Neil D Rawlings, Hsiu-Ju Chiu, Lukasz Jaroszewski, Heath E Klock, Mark W Knuth

PLoS One· December 2011

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Structure and function of the first full-length murein peptide ligase (Mpl) cell wall recycling protein.
Debanu Das, Mireille Hervé, Julie Feuerhelm, Carol L Farr, Hsiu-Ju Chiu, Mark W Knuth

PLoS One· March 2011

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Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiont Bacteroides thetaiotaomicron.
Qingping Xu, Polat Abdubek, Tamara Astakhova, Herbert L Axelrod, Constantina Bakolitsa, Mark W Knuth

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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The structure of Haemophilus influenzae prephenate dehydrogenase suggests unique features of bifunctional TyrA enzymes.
Hsiu Ju Chiu, Polat Abdubek, Tamara Astakhova, Herbert L Axelrod, Dennis Carlton, Mark W Knuth

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structure of a tryptophanyl-tRNA synthetase containing an iron-sulfur cluster.
Gye Won Han, Xiang Lei Yang, Daniel McMullan, Yeeting E Chong, S Sri Krishna, Mark W Knuth

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved α+β core domain and an auxiliary C-terminal treble-clef zinc finger.
Herbert L Axelrod, Debanu Das, Polat Abdubek, Tamara Astakhova, Constantina Bakolitsa, Mark W Knuth

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Conformational changes associated with the binding of zinc acetate at the putative active site of XcTcmJ, a cupin from Xanthomonas campestris pv. campestris.
Herbert L Axelrod, Piotr Kozbial, Daniel McMullan, S Sri Krishna, Mitchell D Miller, Mark W Knuth

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structure of the γ-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-γ-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases.
Qingping Xu, Polat Abdubek, Tamara Astakhova, Herbert L Axelrod, Constantina Bakolitsa, Mark W Knuth

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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