Publications by authors named "Mark Read"

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Genome-scale metabolic modelling of human gut microbes to inform rational community design.
Juan Pablo Molina Ortiz, Dale David McClure, Andrew Holmes, Scott Alan Rice, Mark Norman Read

Gut Microbes· December 2025

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Conceptual frameworks and key questions for assessing the contribution of marine protected areas to shark and ray conservation.
Andrew Chin, Fergus John Molloy, Darren Cameron, Jon C Day, Jessica Cramp, Mark Read

Conserv Biol· February 2023

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TrackSOM: Mapping immune response dynamics through clustering of time-course cytometry data.
Givanna H Putri, Jonathan Chung, Davis N Edwards, Felix Marsh-Wakefield, Irena Koprinska, Mark N Read

Cytometry A· January 2023

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Diet-driven microbial ecology underpins associations between cancer immunotherapy outcomes and the gut microbiome.
Rebecca C Simpson, Erin R Shanahan, Marcel Batten, Irene L M Reijers, Mark Read

Nat Med· November 2022

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High throughput genome scale modeling predicts microbial vitamin requirements contribute to gut microbiome community structure.
Juan P Molina Ortiz, Mark Norman Read, Dale David McClure, Andrew Holmes, Fariba Dehghani

Gut Microbes· September 2022

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Peripheral B-cell dysregulation is associated with relapse after long-term quiescence in patients with multiple sclerosis.
Felix Marsh-Wakefield, Pierre Juillard, Thomas M Ashhurst, Annette Juillard, Diana Shinko, Mark N Read

Immunol Cell Biol· July 2022

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Dietary protein increases T-cell-independent sIgA production through changes in gut microbiota-derived extracellular vesicles.
Jian Tan, Duan Ni, Jemma Taitz, Gabriela Veronica Pinget, Mark Read

Nat Commun· July 2022

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Integration, exploration, and analysis of high-dimensional single-cell cytometry data using Spectre.
Thomas Myles Ashhurst, Felix Marsh-Wakefield, Givanna Haryono Putri, Alanna Gabrielle Spiteri, Diana Shinko, Mark Norman Read

Cytometry A· March 2022

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Enabling rational gut microbiome manipulations by understanding gut ecology through experimentally-evidenced in silico models.
Juan P Molina Ortiz, Dale D McClure, Erin R Shanahan, Fariba Dehghani, Andrew J Holmes, Mark N Read

Gut Microbes· January 2022

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Dietary carbohydrate, particularly glucose, drives B cell lymphopoiesis and function.
Jian Tan, Duan Ni, Jibran Abdul Wali, Darren Anthony Cox, Gabriela Veronica Pinget, Mark Norman Read

iScience· August 2021

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Integrated immune dynamics define correlates of COVID-19 severity and antibody responses.
Marios Koutsakos, Louise C Rowntree, Luca Hensen, Brendon Y Chua, Carolien E van de Sandt, Mark N Read

Cell Rep Med· March 2021

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Detection and characterization of chemotaxis without cell tracking.
Jack D Hywood, Gregory Rice, Sophie V Pageon, Mark N Read, Maté Biro

J R Soc Interface· March 2021

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Using single-cell cytometry to illustrate integrated multi-perspective evaluation of clustering algorithms using Pareto fronts.
Givanna H Putri, Irena Koprinska, Thomas M Ashhurst, Nicholas J C King, Mark N Read

Bioinformatics· January 2021

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Nuclear F-actin counteracts nuclear deformation and promotes fork repair during replication stress.
Noa Lamm, Mark N Read, Max Nobis, David Van Ly, Scott G Page

Nat Cell Biol· December 2020

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Disease risk analysis in sea turtles: A baseline study to inform conservation efforts.
Narges Mashkour, Karina Jones, Sara Kophamel, Teresa Hipolito, Shamim Ahasan, Mark Read

PLoS One· November 2020

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Cytotoxic T cells swarm by homotypic chemokine signalling.
Jorge Luis Galeano Niño, Sophie V Pageon, Szun S Tay, Feyza Colakoglu, Daryan Kempe, Mark N Read

Elife· October 2020

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Fecal microbiota transplantation from high caloric-fed donors alters glucose metabolism in recipient mice, independently of adiposity or exercise status.
Jereon Zoll, Mark N Read, Sarah E Heywood, Emma Estevez, Jessica P S Marshall

Am J Physiol Endocrinol Metab· July 2020

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Strategies for calibrating models of biology.
Mark N Read, Kieran Alden, Jon Timmis, Paul S Andrews

Brief Bioinform· January 2020

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Models of the Gut for Analyzing the Impact of Food and Drugs.
Chiara Anna Maria Fois, Thi Yen Loan Le, Aaron Schindeler, Sina Naficy, Dale David McClure, Mark Norman Read

Adv Healthc Mater· November 2019

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Memory B cells are reactivated in subcapsular proliferative foci of lymph nodes.
Imogen Moran, Akira Nguyen, Weng Hua Khoo, Danyal Butt, Katherine Bourne, Mark N Read

Nat Commun· August 2018

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Towards an Integrative Understanding of Diet-Host-Gut Microbiome Interactions.
Mark N Read, Andrew J Holmes

Front Immunol· May 2017

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Diet-Microbiome Interactions in Health Are Controlled by Intestinal Nitrogen Source Constraints.
Andrew J Holmes, Yi Vee Chew, Feyza Colakoglu, John B Cliff, Eline Klaassens, Mark N Read

Cell Metab· January 2017

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Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection.
Mark N Read, Jacqueline Bailey, Jon Timmis, Tatyana Chtanova

PLoS Comput Biol· September 2016

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Automated multi-objective calibration of biological agent-based simulations.
Mark N Read, Kieran Alden, Louis M Rose, Jon Timmis

J R Soc Interface· September 2016

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Correction: Determining disease intervention strategies using spatially resolved simulations.
Mark Read, Paul S Andrews, Jon Timmis, Richard A Williams, Richard B Greaves

PLoS One· May 2016

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