Publications by authors named "Markus Nebel"

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On the use of sequence-quality information in OTU clustering.
Robert Müller, Markus Nebel

PeerJ· August 2021

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GeFaST: An improved method for OTU assignment by generalising Swarm's fastidious clustering approach.
Robert Müller, Markus E Nebel

BMC Bioinformatics· September 2018

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RNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedup.
Emma Yu Jin, Markus E Nebel

J Math Biol· February 2016

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Combinatorics of RNA Secondary Structures with Base Triples.
Robert Müller, Markus E Nebel

J Comput Biol· July 2015

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Generation of RNA pseudoknot structures with topological genus filtration.
Fenix W D Huang, Markus E Nebel, Christian M Reidys

Math Biosci· October 2013

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Algebraic and combinatorial properties of common RNA pseudoknot classes with applications.
Markus E Nebel, Frank Weinberg

J Comput Biol· October 2012

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Evaluating the effect of disturbed ensemble distributions on SCFG based statistical sampling of RNA secondary structures.
Anika Scheid, Markus E Nebel

BMC Bioinformatics· July 2012

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Analysis of the free energy in a stochastic RNA secondary structure model.
Markus E Nebel, Anika Scheid

IEEE/ACM Trans Comput Biol Bioinform· April 2012

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Addendum: topology and prediction of RNA pseudoknots.
Christian M Reidys, Fenix W D Huang, Jørgen E Andersen, Robert C Penner, Peter F Stadler, Markus E Nebel

Bioinformatics· January 2012

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Loops in canonical RNA pseudoknot structures.
Markus E Nebel, Christian M Reidys, Rita R Wang

J Comput Biol· December 2011

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JAGUC--a software package for environmental diversity analyses.
Markus E Nebel, Sebastian Wild, Michael Holzhauser, Lars Hüttenberger, Raphael Reitzig

J Bioinform Comput Biol· December 2011

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Evaluation of a sophisticated SCFG design for RNA secondary structure prediction.
Markus E Nebel, Anika Scheid

Theory Biosci· December 2011

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Random generation of RNA secondary structures according to native distributions.
Markus E Nebel, Anika Scheid, Frank Weinberg

Algorithms Mol Biol· October 2011

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Topology and prediction of RNA pseudoknots.
Christian M Reidys, Fenix W D Huang, Jørgen E Andersen, Robert C Penner, Peter F Stadler, Markus E Nebel

Bioinformatics· April 2011

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Delimiting operational taxonomic units for assessing ciliate environmental diversity using small-subunit rRNA gene sequences.
Markus Nebel, Cornelia Pfabel, Alexandra Stock, Micah Dunthorn, Thorsten Stoeck

Environ Microbiol Rep· April 2011

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Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions.
Anke Behnke, Matthias Engel, Richard Christen, Markus Nebel, Rolf R Klein

Environ Microbiol· February 2011

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Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water.
Thorsten Stoeck, David Bass, Markus Nebel, Richard Christen, Meredith D M Jones

Mol Ecol· March 2010

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On quantitative effects of RNA shape abstraction.
Markus E Nebel, Anika Scheid

Theory Biosci· November 2009

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Predicting RNA secondary structures with pseudoknots by MCMC sampling.
Dirk Metzler, Markus E Nebel

J Math Biol· January 2008

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Investigation of the Bernoulli model for RNA secondary structures.
Markus E Nebel

Bull Math Biol· September 2004

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Combinatorial properties of RNA secondary structures.
Markus E Nebel

J Comput Biol· January 2003

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