Publications by authors named "Mary Poss"

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ViPRA-Haplo: De Novo Reconstruction of Viral Populations Using Paired End Sequencing Data.
Weiling Li, Raunaq Malhotra, Steven Wu, Manjari Jha, Allen Rodrigo, Mary Poss

IEEE/ACM Trans Comput Biol Bioinform· June 2024

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Recombination Marks the Evolutionary Dynamics of a Recently Endogenized Retrovirus.
Lei Yang, Raunaq Malhotra, Rayan Chikhi, Daniel Elleder, Theodora Kaiser, Mary Poss

Mol Biol Evol· December 2021

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Retroviral sero-reactivity in LGL leukaemia patients and family members.
Susan B Nyland, David J Feith, Mary Poss, Thomas L Olson, Daniel J Krissinger

Br J Haematol· February 2020

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Retrovirus insertion site analysis of LGL leukemia patient genomes.
Weiling Li, Lei Yang, Robert S Harris, Lin Lin, Thomas L Olson, Mary Poss

BMC Med Genomics· June 2019

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A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-K In human populations.
Weiling Li, Lin Lin, Raunaq Malhotra, Lei Yang, Raj Acharya, Mary Poss

PLoS Comput Biol· March 2019

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A random forest classifier for detecting rare variants in NGS data from viral populations.
Raunaq Malhotra, Manjari Jha, Mary Poss, Raj Acharya

Comput Struct Biotechnol J· July 2017

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Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions.
Sean Hoban, Joanna L Kelley, Katie E Lotterhos, Michael F Antolin, Gideon Bradburd, Mary L Poss

Am Nat· October 2016

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Separating Putative Pathogens from Background Contamination with Principal Orthogonal Decomposition: Evidence for Leptospira in the Ugandan Neonatal Septisome.
Steven J Schiff, Julius Kiwanuka, Gina Riggio, Lan Nguyen, Kevin Mu, Mary Poss

Front Med (Lausanne)· July 2016

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Induction and characterization of a replication competent cervid endogenous gammaretrovirus (CrERV) from mule deer cells.
Helena Fábryová, Tomáš Hron, Hana Kabíčková, Mary Poss, Daniel Elleder

Virology· November 2015

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Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data.
Yang Liu, Francesca Chiaromonte, Howard Ross, Raunaq Malhotra, Daniel Elleder, Mary Poss

BMC Bioinformatics· June 2015

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The population history of endogenous retroviruses in mule deer (Odocoileus hemionus).
Pauline L Kamath, Daniel Elleder, Le Bao, Paul C Cross, John H Powell, Mary Poss

J Hered· October 2014

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Lineage diversification of pigeon paramyxovirus effect re-emergence potential in chickens.
Yee Ling Chong, Oekyung Kim, Mary Poss

Virology· August 2014

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The microbial spectrum of neonatal sepsis in Uganda: recovery of culturable bacteria in mother-infant pairs.
Julius Kiwanuka, Joel Bazira, Juliet Mwanga, Dickson Tumusiime, Eunice Nyesigire, Mary Poss

PLoS One· March 2014

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Anticipating the prevalence of avian influenza subtypes H9 and H5 in live-bird markets.
Kim M Pepin, Jia Wang, Colleen T Webb, Jennifer A Hoeting, Mary Poss

PLoS One· July 2013

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Successful establishment and global dispersal of genotype VI avian paramyxovirus serotype 1 after cross species transmission.
Yee Ling Chong, Tommy Tsan-Yuk Lam, Oekyung Kim, Huaguang Lu, Patty Dunn, Mary Poss

Infect Genet Evol· July 2013

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Mutant-bin: unsupervised haplotype estimation of viral population diversity without reference genome.
Shruthi Prabhakara, Raunaq Malhotra, Raj Acharya, Mary Poss

J Comput Biol· June 2013

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Multiannual patterns of influenza A transmission in Chinese live bird market systems.
Kim M Pepin, Jia Wang, Colleen T Webb, Gavin J D Smith, Mary Poss

Influenza Other Respir Viruses· January 2013

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The origin of specificity by means of natural selection: evolved and nonhost resistance in host-pathogen interactions.
Janis Antonovics, Mike Boots, Dieter Ebert, Britt Koskella, Mary Poss

Evolution· January 2013

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Polymorphic integrations of an endogenous gammaretrovirus in the mule deer genome.
Daniel Elleder, Oekyung Kim, Abinash Padhi, Jason G Bankert, Ivan Simeonov, Mary Poss

J Virol· March 2012

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Virus dynamics and evolution: bridging scales and disciplines.
Mary Poss

Viruses· August 2011

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Association of bacteria with hydrocephalus in Ugandan infants.
Lingling Li, Abinash Padhi, Sylvia L Ranjeva, Sarah C Donaldson, Benjamin C Warf, Mary Poss

J Neurosurg Pediatr· January 2011

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Profound differences in virus population genetics correspond to protection from CD4 decline resulting from feline lentivirus coinfection.
Abinash Padhi, Howard Ross, Julie Terwee, Sue Vandewoude, Mary Poss

Viruses· December 2010

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Exploratory Spatial Analysis of in vitro Respiratory Syncytial Virus Co-infections.
Ivan Simeonov, Xiaoyan Gong, Oekyung Kim, Mary Poss, Francesca Chiaromonte

Viruses· December 2010

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Nodeomics: pathogen detection in vertebrate lymph nodes using meta-transcriptomics.
Nicola E Wittekindt, Abinash Padhi, Stephan C Schuster, Ji Qi, Fangqing Zhao, Mary Poss

PLoS One· October 2010

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Dynamic models of immune responses: what is the ideal level of detail?
Juilee Thakar, Mary Poss, Réka Albert, Gráinne H Long, Ranran Zhang

Theor Biol Med Model· August 2010

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