Publications by authors named "Mathieu Blanchette"

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A multivariate approach to identify association between peripheral blood DNA methylation and cerebrospinal fluid biomarkers of Alzheimer disease.
Bowei Xiao, Yixiao Zeng, Kathleen Oros Klein, Bianca Granato, Mathieu Blanchette

Sci Rep· November 2025

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RobusTAD: reference panel based annotation of nested topologically associating domains.
Yanlin Zhang, Rola Dali, Mathieu Blanchette

Genome Biol· May 2025

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R3Design: deep tertiary structure-based RNA sequence design and beyond.
Cheng Tan, Yijie Zhang, Zhangyang Gao, Hanqun Cao, Siyuan Li, Mathieu Blanchette

Brief Bioinform· November 2024

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TULIPs decorate the three-dimensional genome of PFA ependymoma.
Michael J Johnston, John J Y Lee, Bo Hu, Ana Nikolic, Elham Hasheminasabgorji, Mathieu Blanchette

Cell· September 2024

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ARGV: 3D genome structure exploration using augmented reality.
Chrisostomos Drogaris, Yanlin Zhang, Eric Zhang, Elena Nazarova, Roman Sarrazin-Gendron, Mathieu Blanchette

BMC Bioinformatics· August 2024

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PERFUMES: pipeline to extract RNA functional motifs and exposed structures.
Arnaud Chol, Roman Sarrazin-Gendron, Éric Lécuyer, Mathieu Blanchette, Jérôme Waldispühl

Bioinformatics· February 2024

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Graphylo: A deep learning approach for predicting regulatory DNA and RNA sites from whole-genome multiple alignments.
Dongjoon Lim, Changhyun Baek, Mathieu Blanchette

iScience· February 2024

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Posterior inference of Hi-C contact frequency through sampling.
Yanlin Zhang, Christopher J F Cameron, Mathieu Blanchette

Front Bioinform· February 2024

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H3K27me3 spreading organizes canonical PRC1 chromatin architecture to regulate developmental programs.
Brian Krug, Bo Hu, Haifen Chen, Adam Ptack, Xiao Chen, Mathieu Blanchette

bioRxiv· November 2023

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Reference panel-guided super-resolution inference of Hi-C data.
Yanlin Zhang, Mathieu Blanchette

Bioinformatics· June 2023

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Reference panel guided topological structure annotation of Hi-C data.
Yanlin Zhang, Mathieu Blanchette

Nat Commun· December 2022

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K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas.
Selin Jessa, Abdulshakour Mohammadnia, Ashot S Harutyunyan, Maud Hulswit, Srinidhi Varadharajan, Mathieu Blanchette

Nat Genet· December 2022

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Detection and genomic analysis of BRAF fusions in Juvenile Pilocytic Astrocytoma through the combination and integration of multi-omic data.
Melissa Zwaig, Audrey Baguette, Bo Hu, Michael Johnston, Hussein Lakkis, Mathieu Blanchette

BMC Cancer· December 2022

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Reconstruction of full-length LINE-1 progenitors from ancestral genomes.
Laura F Campitelli, Isaac Yellan, Mihai Albu, Marjan Barazandeh, Zain M Patel, Mathieu Blanchette

Genetics· July 2022

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Leishmania parasites exchange drug-resistance genes through extracellular vesicles.
Noélie Douanne, George Dong, Atia Amin, Lorena Bernardo, Mathieu Blanchette

Cell Rep· July 2022

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PhyloPGM: boosting regulatory function prediction accuracy using evolutionary information.
Faizy Ahsan, Zichao Yan, Doina Precup, Mathieu Blanchette

Bioinformatics· June 2022

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ETS1, ELK1, and ETV4 Transcription Factors Regulate Angiopoietin-1 Signaling and the Angiogenic Response in Endothelial Cells.
Sharon Harel, Veronica Sanchez, Alaa Moamer, Javier E Sanchez-Galan, Mohammad N Abid Hussein, Mathieu Blanchette

Front Physiol· July 2021

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Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.
Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki, Kosuke Hashimoto, Giovanni Pascarella, Mathieu Blanchette

Nat Commun· May 2021

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Profiling Chromatin Landscape at High Resolution and Throughput with 2C-ChIP.
Xue Qing David Wang, Christopher J F Cameron, Dana Segal, Denis Paquette, Mathieu Blanchette

Methods Mol Biol· March 2021

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Histone H3.3G34-Mutant Interneuron Progenitors Co-opt PDGFRA for Gliomagenesis.
Carol C L Chen, Shriya Deshmukh, Selin Jessa, Djihad Hadjadj, Véronique Lisi, Mathieu Blanchette

Cell· December 2020

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Supervised learning on phylogenetically distributed data.
Elliot Layne, Erika N Dort, Richard Hamelin, Yue Li, Mathieu Blanchette

Bioinformatics· December 2020

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EvoLSTM: context-dependent models of sequence evolution using a sequence-to-sequence LSTM.
Dongjoon Lim, Mathieu Blanchette

Bioinformatics· July 2020

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Graph neural representational learning of RNA secondary structures for predicting RNA-protein interactions.
Zichao Yan, William L Hamilton, Mathieu Blanchette

Bioinformatics· July 2020

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LAMPS: an analysis pipeline for sequence-specific ligation-mediated amplification reads.
Christopher J F Cameron, Xue Q D Wang, Josée Dostie, Mathieu Blanchette

BMC Res Notes· June 2020

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