Publications by authors named "Matt Oates"

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Hypothesis-free phenotype prediction within a genetics-first framework.
Chang Lu, Jan Zaucha, Rihab Gam, Hai Fang, Ben Smithers, Matt E Oates

Nat Commun· February 2023

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'Why genes in pieces?'-revisited.
Ben Smithers, Matt Oates, Julian Gough

Nucleic Acids Res· June 2019

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The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver.
Arun Prasad Pandurangan, Jonathan Stahlhacke, Matt E Oates, Ben Smithers, Julian Gough

Nucleic Acids Res· January 2019

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A Subset of Ubiquitin-Conjugating Enzymes Is Essential for Plant Immunity.
Bangjun Zhou, Ravi V Mural, Xuanyang Chen, Matt E Oates, Richard A Connor

Plant Physiol· February 2017

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy.
Yuxiang Jiang, Tal Ronnen Oron, Wyatt T Clark, Asma R Bankapur, Daniel D'Andrea, Matt Oates

Genome Biol· September 2016

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Molecular Principles of Gene Fusion Mediated Rewiring of Protein Interaction Networks in Cancer.
Natasha S Latysheva, Matt E Oates, Louis Maddox, Tilman Flock, Julian Gough

Mol Cell· August 2016

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Evolution of the Calcium-Based Intracellular Signaling System.
Elodie Marchadier, Matt E Oates, Hai Fang, Philip C J Donoghue, Alistair M Hetherington

Genome Biol Evol· July 2016

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Three reasons protein disorder analysis makes more sense in the light of collagen.
Ben Smithers, Matt E Oates, Peter Tompa, Julian Gough

Protein Sci· May 2016

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A predictive computational framework for direct reprogramming between human cell types.
Owen J L Rackham, Jaber Firas, Hai Fang, Matt E Oates, Melissa L Holmes

Nat Genet· March 2016

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Function-selective domain architecture plasticity potentials in eukaryotic genome evolution.
Viktorija Linkeviciute, Owen J L Rackham, Julian Gough, Matt E Oates, Hai Fang

Biochimie· December 2015

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The genome of Aiptasia, a sea anemone model for coral symbiosis.
Sebastian Baumgarten, Oleg Simakov, Lisl Y Esherick, Yi Jin Liew, Erik M Lehnert, Matt E Oates

Proc Natl Acad Sci U S A· September 2015

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Splice junctions are constrained by protein disorder.
Ben Smithers, Matt E Oates, Julian Gough

Nucleic Acids Res· May 2015

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A proteome quality index.
Jan Zaucha, Jonathan Stahlhacke, Matt E Oates, Natalie Thurlby, Owen J L Rackham

Environ Microbiol· January 2015

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Genome3D: exploiting structure to help users understand their sequences.
Tony E Lewis, Ian Sillitoe, Antonina Andreeva, Tom L Blundell, Daniel W A Buchan, Matt E Oates

Nucleic Acids Res· January 2015

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The SUPERFAMILY 1.75 database in 2014: a doubling of data.
Matt E Oates, Jonathan Stahlhacke, Dimitrios V Vavoulis, Ben Smithers, Owen J L Rackham

Nucleic Acids Res· January 2015

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The InterPro protein families database: the classification resource after 15 years.
Alex Mitchell, Hsin-Yu Chang, Louise Daugherty, Matthew Fraser, Sarah Hunter, Matt Oates

Nucleic Acids Res· January 2015

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Structured and disordered facets of the GPCR fold.
A J Venkatakrishnan, Tilman Flock, Daniel Estévez Prado, Matt E Oates, Julian Gough

Curr Opin Struct Biol· August 2014

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A daily-updated tree of (sequenced) life as a reference for genome research.
Hai Fang, Matt E Oates, Ralph B Pethica, Jenny M Greenwood, Adam J Sardar

Sci Rep· June 2014

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The evolution of human cells in terms of protein innovation.
Adam J Sardar, Matt E Oates, Hai Fang, Alistair R R Forrest, Hideya Kawaji

Mol Biol Evol· June 2014

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D²P²: database of disordered protein predictions.
Matt E Oates, Pedro Romero, Takashi Ishida, Mohamed Ghalwash, Marcin J Mizianty

Nucleic Acids Res· January 2013

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