Publications by authors named "Matthew Hufford"

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Widespread turnover of a conserved cis-regulatory code across 589 grass species.
Charles O Hale, Sheng-Kai Hsu, Jingjing Zhai, Aimee J Schulz, Taylor Aubuchon-Elder, Matthew Hufford

Mol Biol Evol· December 2025

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eNAMPT Is a Novel DAMP and Therapeutic Target in Human and Murine Pulmonary Fibrosis.
Nancy G Casanova, Jose D Herazo-Maya, Carrie L Kempf, Belinda L Sun, Jin H Song, Matthew K Hufford

Am J Respir Cell Mol Biol· October 2025

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Genetic variation at transcription factor binding sites largely explains phenotypic heritability in maize.
Julia Engelhorn, Samantha J Snodgrass, Amelie Kok, Arun S Seetharam, Michael Schneider, Matthew B Hufford

Nat Genet· September 2025

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Fishing for a reelGene: evaluating gene models with evolution and machine learning.
Aimee J Schulz, Jingjing Zhai, Taylor AuBuchon-Elder, Carson M Andorf, Mohamed Z El-Walid, Matthew B Hufford

Plant J· September 2025

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Designing a nitrogen-efficient cold-tolerant maize for modern agricultural systems.
Jonathan Odilón Ojeda-Rivera, Allison C Barnes, Elizabeth A Ainsworth, Ruthie Angelovici, Bruno Basso, Matthew B Hufford

Plant Cell· July 2025

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Author Correction: MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication.
Jonathan Cahn, Michael Regulski, Jason Lynn, Evan Ernst, Cristiane de Santis Alves, Matthew B Hufford

Nat Commun· July 2025

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Environmental data provide marginal benefit for predicting climate adaptation.
Forrest Li, Daniel J Gates, Edward S Buckler, Matthew B Hufford, Garrett M Janzen

PLoS Genet· June 2025

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A unified VCF dataset from nearly 1,500 diverse maize accessions and resources to explore the genomic landscape of maize.
Carson M Andorf, Jeffrey Ross-Ibarra, Arun S Seetharam, Matthew B Hufford, Margaret R Woodhouse

G3 (Bethesda)· February 2025

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Extensive genome evolution distinguishes maize within a stable tribe of grasses.
Michelle C Stitzer, Arun S Seetharam, Armin Scheben, Sheng-Kai Hsu, Aimee J Schulz, Matthew B Hufford

bioRxiv· January 2025

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MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication.
Jonathan Cahn, Michael Regulski, Jason Lynn, Evan Ernst, Cristiane de Santis Alves, Matthew B Hufford

Nat Commun· December 2024

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Efficacy and Safety of Low-Dose, Rapidly Infused Bamlanivimab and Etesevimab: Phase 3 BLAZE-1 Trial for Mild-to-Moderate COVID-19.
Dipak R Patel, Lisa Macpherson, Martin Bohm, Himanshu Upadhyaya, Carmen Deveau, Matthew M Hufford

Infect Dis Ther· October 2024

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Differences in activity and stability drive transposable element variation in tropical and temperate maize.
Shujun Ou, Armin Scheben, Tyler Collins, Yinjie Qiu, Arun S Seetharam, Matthew B Hufford

Genome Res· September 2024

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Fine mapping of major QTL qshgd1 for spontaneous haploid genome doubling in maize (Zea mays L.).
Tyler L Foster, Monika Kloiber-Maitz, Laurine Gilles, Ursula K Frei, Sarah Pfeffer, Matthew B Hufford

Theor Appl Genet· May 2024

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Response to Commentary: Accounting for diverse transposable element landscapes is key to developing and evaluating accurate de novo annotation strategies.
Shujun Ou, Ning Jiang, Candice N Hirsch, Matthew B Hufford

Genome Biol· January 2024

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The Ga1 locus of the genus Zea is associated with novel genome structures derived from multiple, independent nonhomologous recombination events.
Amruta R Bapat, Adrienne N Moran Lauter, Matthew B Hufford, Nicholas A Boerman, M Paul Scott

G3 (Bethesda)· November 2023

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Unraveling Prevalence and Effects of Deleterious Mutations in Maize Elite Lines across Decades of Modern Breeding.
Shichao Sun, Baobao Wang, Changyu Li, Gen Xu, Jinliang Yang, Matthew B Hufford

Mol Biol Evol· August 2023

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A complete telomere-to-telomere assembly of the maize genome.
Jian Chen, Zijian Wang, Kaiwen Tan, Wei Huang, Junpeng Shi, Matthew B Hufford

Nat Genet· July 2023

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Pharmacokinetics, Efficacy, and Safety of a SARS-CoV-2 Antibody Treatment in Pediatric Participants: An Open-Label Addendum of a Placebo-Controlled, Randomized Phase 2/3 Trial.
Himanshu P Upadhyaya, Jenny Y Chien, Amanda J Long, Martin S Bohm, Nicole L Kallewaard, Matthew M Hufford

Infect Dis Ther· July 2023

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A happy accident: a novel turfgrass reference genome.
Alyssa R Phillips, Arun S Seetharam, Patrice S Albert, Taylor AuBuchon-Elder, James A Birchler, Matthew B Hufford

G3 (Bethesda)· June 2023

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ERG Functionally Overlaps with Other Ets Proteins in Promoting TH9 Cell Expression of Il9 during Allergic Lung Inflammation.
Rakshin Kharwadkar, Benjamin J Ulrich, Michelle Chu, Byunghee Koh, Matthew M Hufford

J Immunol· March 2023

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Targeting P-selectin glycoprotein ligand 1 in preclinical ARDS: Genetic and epigenetic regulation of the promoter.
Xiaoguang Sun, Saad Sammani, Matthew Hufford, Belinda L Sun, Carrie L Kempf

Pulm Circ· January 2023

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Genome sequencing reveals evidence of adaptive variation in the genus Zea.
Lu Chen, Jingyun Luo, Minliang Jin, Ning Yang, Xiangguo Liu, Matthew B Hufford

Nat Genet· November 2022

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Allele-specific Expression Reveals Multiple Paths to Highland Adaptation in Maize.
Haixiao Hu, Taylor Crow, Saghi Nojoomi, Aimee J Schulz, Juan M Estévez-Palmas, Matthew B Hufford

Mol Biol Evol· November 2022

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Biochemical and genomic identification of novel biomarkers in progressive sarcoidosis: HBEGF, eNAMPT, and ANG-2.
Nancy G Casanova, Vivian Reyes-Hernon, Taylor Gregory, Belinda Sun, Tadeo Bermudez, Matthew K Hufford

Front Med (Lausanne)· October 2022

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eNAMPT Neutralization Preserves Lung Fluid Balance and Reduces Acute Renal Injury in Porcine Sepsis/VILI-Induced Inflammatory Lung Injury.
Saad Sammani, Tadeo Bermudez, Carrie L Kempf, Jin H Song, Justin C Fleming, Matthew Hufford

Front Physiol· June 2022

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